Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0292
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    29   0.97 
SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr ...    28   1.7  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    27   3.9  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.2  
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...    26   5.2  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    26   5.2  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    25   9.1  

>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 285 QSYCTDCPLSLPNTCRSICHRPLFWLW 205
           +S+C  C L++PN     C R + W W
Sbjct: 648 ESFCATCDLNVPN---KTCDRRMVWAW 671


>SPBC839.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 238

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 114 KMFGRRWTSVLVILAAINLTSCAQIEDPCK-TKARIVADDKYCDKYWEVTTD 266
           ++ G  ++   ++LA  N+    Q  D  K  +  I+ D K+C K W++  D
Sbjct: 95  QLVGVDYSEAAIVLAK-NIARHRQFSDKVKFQQLDIIKDSKFCSKDWDLILD 145


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -2

Query: 219 LFWLWSCTGPRFGRMMLGLLLPGSREHSSNVVQTFYICSLIKFSSKQATHTRRK 58
           LFW+   T  RFG+ ML   L        N+++       + F+S       RK
Sbjct: 427 LFWVLDRTYTRFGQRMLQRWLQKPLVDKENIIERLDAVEELAFNSNSQVQAIRK 480


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
 Frame = -3

Query: 437 YSPPPKGXPQCSVPIGGFI*TSGTRSNLTSKGNRS--PQSPLDVCPQKQV 294
           Y P P G PQ  V  G     + + +N  +K  R   P    D  P +QV
Sbjct: 86  YLPTPAGPPQIPVNTGKRYTLTSSSANYMTKSERQMRPPKSYDFPPSQQV 135


>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 59  FRRVCVACFELNFIK-EHI*NVWTTLDECSR 148
           +R VC AC  LN I   H+  V  T DE  +
Sbjct: 98  YREVCSACHSLNLIAWRHLVGVTHTADEAKQ 128


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 965

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +2

Query: 125  TTLDECSRDPGSNKPNIMRPNRGPVQDQSQNSGR*QILRQVLGSDNGQSVQYD 283
            +T+DE +R P   +P+I R  R   +D  Q+  R  +L  V+ S  G  V YD
Sbjct: 865  STMDEFARGPNDPQPHISRLPR-CYEDGWQSFDRDDMLSFVIWSSGG--VDYD 914


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 186 IEDPCKTKARIVADDKYCDKYWEVTTDNRYNTTAPMDLFLRA 311
           I D  + +  + AD+ Y D  WEV   N  + T   +L + A
Sbjct: 472 ISDESEEEEDLSADEDYVDSEWEVVPHNIASYTTIKELGIGA 513


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,147,770
Number of Sequences: 5004
Number of extensions: 65743
Number of successful extensions: 184
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)