Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0292
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1200 + 26937624-26937674,26937913-26938005,26938582-269387... 30 1.8
03_03_0015 - 13755971-13756957 30 1.8
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342... 30 2.4
04_04_0286 - 24151135-24151392,24152261-24152330,24153468-24154096 29 3.1
11_06_0050 + 19631164-19631987,19632103-19634023 29 4.1
04_04_0887 + 29095087-29096166 29 4.1
01_03_0114 - 12649104-12649141,12650137-12650245,12650500-126506... 29 5.4
11_01_0628 + 5052042-5052863,5053232-5053475,5054136-5054155 28 7.2
08_02_1441 - 27116242-27116354,27116646-27116742,27116841-271170... 28 7.2
05_01_0570 + 5061600-5062142,5062790-5062972 28 7.2
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 28 9.5
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 28 9.5
>12_02_1200 +
26937624-26937674,26937913-26938005,26938582-26938728,
26940299-26940379,26940711-26940849,26940977-26941013,
26941095-26941202,26941434-26941533,26941638-26941783,
26941862-26941953,26942086-26942180,26942435-26942531,
26942623-26942766,26942912-26943129,26943213-26943323
Length = 552
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -1
Query: 658 LECKYRXQDLP*GHVTVRVLVAERMLWTSXNXLGPVA 548
LEC + ++ GHV +RV A+++L T N G +A
Sbjct: 452 LECSHYMKNFDVGHVPLRVAKAKQLLGTINNNFGTLA 488
>03_03_0015 - 13755971-13756957
Length = 328
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = +3
Query: 270 RYNTTAPMDLFLRANIEG*LRAAITLGGQITASTRSSDKSPNRHGALRXPFXGGA 434
R+ T A +D +R + G RA G T R + P HG L GGA
Sbjct: 150 RWYTAARVDDMVRRGLVGEARAGFDAGADYTRGVRRAIGLPEMHGYLLAEREGGA 204
>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
26834330-26834732,26834840-26835118,26835285-26835716,
26836362-26836838,26837171-26837212,26837285-26837545,
26837637-26838938,26839146-26839575,26839643-26840046,
26840360-26840716,26840842-26841102,26841494-26842141,
26842231-26842452,26842547-26842768,26842860-26843009,
26843739-26844111,26844467-26844689,26845167-26845425,
26845585-26845920,26846013-26846999,26848395-26849624,
26849706-26849768,26849858-26849910,26849998-26850079,
26850520-26850588,26851070-26851129,26851205-26851267,
26851993-26852101,26852742-26852827,26853120-26853847,
26854613-26854676
Length = 3716
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +2
Query: 92 NFIKEHI*NVWTTLDECSRDPGSNKPNIMRPNRGPVQDQSQNS 220
NFI I + L +RD GS+ N +R + P QD S NS
Sbjct: 2185 NFIDPFIGLLLRVLQRLARDMGSSAGNHVRQGQRPEQDSSVNS 2227
>04_04_0286 - 24151135-24151392,24152261-24152330,24153468-24154096
Length = 318
Score = 29.5 bits (63), Expect = 3.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 432 AVRYLGHETSCTRYW 476
AVRY+G+E CT YW
Sbjct: 262 AVRYIGYEPRCTPYW 276
>11_06_0050 + 19631164-19631987,19632103-19634023
Length = 914
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 577 SKASSLQRGPEX*RALMASPATGTCIPGWVSSAATL 684
S SL GP+ +++ S T T PGW+SS +L
Sbjct: 731 STCGSLSPGPQRLQSIDMSFCTLTAFPGWMSSLCSL 766
>04_04_0887 + 29095087-29096166
Length = 359
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/50 (32%), Positives = 19/50 (38%)
Frame = -3
Query: 440 PYSPPPKGXPQCSVPIGGFI*TSGTRSNLTSKGNRSPQSPLDVCPQKQVH 291
P PPP P V + + G RSN S P CP Q+H
Sbjct: 134 PPPPPPPPLPLRPVVLHRAVDAGGKRSNKEDDAKFSSPPPSSHCPTTQLH 183
>01_03_0114 -
12649104-12649141,12650137-12650245,12650500-12650691,
12650797-12650904,12650986-12651162,12652331-12652459,
12653314-12653589,12653667-12653916,12654909-12655561
Length = 643
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +1
Query: 40 Y*TLITFSTSVCCLFRTKFYQRTYIKCLDD 129
Y TLIT T C+F TK YI DD
Sbjct: 421 YYTLITLKTIAICMFGTKVVPAKYIMKTDD 450
>11_01_0628 + 5052042-5052863,5053232-5053475,5054136-5054155
Length = 361
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Frame = +2
Query: 386 IPQSARSIAEXLXGGGCTV-SWPRDLLHQVLDLLERHRHGAACIGGXLYNEXAHSCDWPE 562
+P + R+ GGG + + P +LH++L LL H C+ + S
Sbjct: 1 MPPAKRAKKAAAAGGGDLIGALPDAMLHRILSLLPAHEAVRTCVLARRWRHLWRSAPGLR 60
Query: 563 XVXGCPKHPLCNEDP 607
V + P E+P
Sbjct: 61 IVRAAGRPPATVEEP 75
>08_02_1441 -
27116242-27116354,27116646-27116742,27116841-27117058,
27117279-27117422,27117512-27117608,27117932-27118026,
27118140-27118231,27118326-27118471,27118565-27118664,
27118857-27118964,27119040-27119085,27119210-27119345,
27119847-27120044
Length = 529
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 658 LECKYRXQDLP*GHVTVRVLVAERMLWTSXNXLGPVA 548
LEC + ++ GHV +R A+++L T N G +A
Sbjct: 396 LECSHYMKNFDVGHVPLRAAKAKQLLVTINNNFGTLA 432
>05_01_0570 + 5061600-5062142,5062790-5062972
Length = 241
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +1
Query: 199 ARPKPE*WPMTNTATSIGK*QRTIGTIRLPQWTCFCGQTSRGD*GLRLPLEVKLLRVPEV 378
A P + W TA ++G+ + R+P+W +CG G+ P +L R P
Sbjct: 46 AAPGEKRWGTEETA-AVGERRMAAVWRRMPRWRDWCGMEGGGELRGSAPASSRLNRAPRC 104
Query: 379 QI 384
++
Sbjct: 105 RV 106
>01_05_0439 -
22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -3
Query: 437 YSPPPKGXPQCSVPIGGFI*TSGTRSNLTSKGNRS 333
Y PPP P C +P G I +SG +N S RS
Sbjct: 50 YPPPPPQLPTCVLPAGVRIYSSGLDANDFSTYPRS 84
>01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -3
Query: 656 GMQVPVAGLAIRARYXSGP 600
G VP+ GL I ARY SGP
Sbjct: 1114 GYFVPIFGLCIAARYGSGP 1132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,146,862
Number of Sequences: 37544
Number of extensions: 493523
Number of successful extensions: 1358
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1358
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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