Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0292
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.063
SB_20985| Best HMM Match : Neur_chan_memb (HMM E-Value=4.3e-10)        30   1.8  
SB_38560| Best HMM Match : zf-C3HC4 (HMM E-Value=3.1)                  30   2.4  
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38)               29   4.2  
SB_2355| Best HMM Match : Carn_acyltransf (HMM E-Value=0)              28   7.3  
SB_14572| Best HMM Match : ANF_receptor (HMM E-Value=6.7e-18)          28   7.3  
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)              28   9.6  

>SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 35.1 bits (77), Expect = 0.063
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = +2

Query: 509 CIGGXLYNEXAHSCDWPEXVXGCP 580
           C GG LYNE    CDWP  V  CP
Sbjct: 107 CPGGLLYNEKTKQCDWPRNV-DCP 129


>SB_20985| Best HMM Match : Neur_chan_memb (HMM E-Value=4.3e-10)
          Length = 517

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 320 LDVCPQKQVHWGSRIVPIVRCH 255
           LDV P  +V WG+R   I RCH
Sbjct: 63  LDVTPGGRVFWGTRATLIARCH 84


>SB_38560| Best HMM Match : zf-C3HC4 (HMM E-Value=3.1)
          Length = 197

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 243 CRSICHRPLFWLWS 202
           C  +CH+P FW W+
Sbjct: 89  CHQVCHKPCFWKWA 102


>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1831

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +2

Query: 509  CIGGXLYNEXAHSCDWPEXVXGCPKHPLCNEDPNXNVPLWQVLXPVLAFQGGY 667
            C  G  ++    +CDWP  V  C + P  +  P   +PL  +    L   G Y
Sbjct: 1024 CPAGLKWSVKKTTCDWPRYV-DCDRTPTTSGTPTKPIPLCDLSCLTLYPDGTY 1075


>SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38)
          Length = 1215

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 22/64 (34%), Positives = 34/64 (53%)
 Frame = -1

Query: 301  NKSIGAVVLYRLSVVTSQYLSQYLSSATILALVLHGSSIWAHDVRFIAARITRTLVQRRP 122
            N +IG   +++ S  +   LS  LS +  LA  ++ +S    D+  I   I RTL QR P
Sbjct: 1007 NGTIGQEPVFKSS--SKGDLSSELSPSVRLAFAVNMTS--HKDIPDIITEIRRTLDQRSP 1062

Query: 121  NILY 110
            N++Y
Sbjct: 1063 NVVY 1066


>SB_2355| Best HMM Match : Carn_acyltransf (HMM E-Value=0)
          Length = 1559

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 276 CTDCPLSLPNTCRSICHRPLFWLWSCTG 193
           CTD  LSLP T   +C R    +W   G
Sbjct: 362 CTDSDLSLPVTLLQVCARQPILVWRLPG 389


>SB_14572| Best HMM Match : ANF_receptor (HMM E-Value=6.7e-18)
          Length = 808

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 332 PQSPLDVCPQKQVHWGSRIVPIVRCHFPILVAVF 231
           P+S  D  P+ +VHW S  +  ++CH+  LVA +
Sbjct: 705 PESGQDSGPENRVHW-SESMDRLQCHWEKLVAKY 737


>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
          Length = 1023

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 339 SQPSVTP-RCLPAKTSPLGQSYCTDC 265
           S  ++ P RC P + +P GQ+ CT C
Sbjct: 373 SNQTIAPVRCSPGEYAPAGQANCTAC 398


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,163,023
Number of Sequences: 59808
Number of extensions: 566183
Number of successful extensions: 1512
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1512
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)