Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0292
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical pr...    36   0.024
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z81485-6|CAB03979.1|  784|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U41548-2|AAA83204.1|  399|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p...    29   4.8  
Z81035-4|CAB02737.1|  503|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical
           protein R02F2.4 protein.
          Length = 431

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 26/106 (24%), Positives = 42/106 (39%)
 Frame = +2

Query: 260 NGQSVQYDCPNGLVFAGKHRGVTEGCDYPWRSNYCEYPKFR*IPQSARSIAEXLXGGGCT 439
           NG  +   CP+GL+F+ K+    + CDY W  + C+      +     S A         
Sbjct: 260 NGIPIVMFCPDGLMFSEKN----QMCDYEWNVDECDLESSGFMENYKASEALTPCTNMDN 315

Query: 440 VSWPRDLLHQVLDLLERHRHGAACIGGXLYNEXAHSCDWPEXVXGC 577
             +  D   +VL       +   C    ++NE +  CD+PE    C
Sbjct: 316 GLYALDCTPRVLSCQNGRENIFECPPSLVFNENSLICDYPETSLKC 361



 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 497 HGAACIGGXLYNEXAHSCDWPEXVXGC 577
           H   C    ++N    SCDWP+ V  C
Sbjct: 203 HRRNCPANLVFNPAISSCDWPKNVMDC 229


>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical protein
            H02I12.1 protein.
          Length = 1319

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 506  ACIGGXLYNEXAHSCDWPEXVXGCPKHPLCN 598
            +C     +N+    CD+P+ V GC  H   N
Sbjct: 1212 SCQSSLAFNQLTGKCDYPQKVSGCENHGQTN 1242



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 509  CIGGXLYNEXAHSCDWPEXVXGC 577
            C  G ++N     CDWP  V  C
Sbjct: 1274 CPSGTVFNPLLSVCDWPSAVPSC 1296


>Z81485-6|CAB03979.1|  784|Caenorhabditis elegans Hypothetical
           protein C49F5.6 protein.
          Length = 784

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
 Frame = +3

Query: 9   PSLTSSNAFVILNINNIFDECVLPVSN*ILSKNIYKMFGRRW-TSVLVILAAINLTSCAQ 185
           PSLT S +    N+N      + P S    SK++  +    +  SV V+  +I+    A 
Sbjct: 59  PSLTLSMS---PNMNFSSRMALAPTSPMKRSKSVPNILSGEYPNSVCVVANSIDENGDAG 115

Query: 186 IE--DPCKTKARIVADDKYCDKYWEVTTDNRYN 278
           ++  D   TK  ++  D Y D YW+    N  N
Sbjct: 116 VDVTDCASTKPLVLGKDNYQDNYWDSQETNHRN 148


>U41548-2|AAA83204.1|  399|Caenorhabditis elegans Hypothetical
           protein M02F4.1 protein.
          Length = 399

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 23/79 (29%), Positives = 32/79 (40%)
 Frame = +2

Query: 128 TLDECSRDPGSNKPNIMRPNRGPVQDQSQNSGR*QILRQVLGSDNGQSVQYDCPNGLVFA 307
           T D+ + D G N     +P R P+QD  +   R +  R+VL  D       DCP+G+   
Sbjct: 245 TDDDDNLDDGDN----FKPRRKPLQDTQEEDNRPK--REVL--DLPPLTCPDCPDGIETL 296

Query: 308 GKHRGVTEGCDYPWRSNYC 364
           G          Y W    C
Sbjct: 297 GSDLDFAFSTIYSWTRRAC 315


>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
           protein C39D10.7 protein.
          Length = 1185

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +2

Query: 509 CIGGXLYNEXAHSCDWPEXVXGCPKH-PLCNEDPNXNVPL 625
           C  G  Y+     CD  E V GCP++ P  +  P    P+
Sbjct: 718 CPSGLYYSRLQDKCDVKENVEGCPEYKPTTDATPAAEQPV 757


>Z81035-4|CAB02737.1|  503|Caenorhabditis elegans Hypothetical
           protein C15H11.5 protein.
          Length = 503

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +3

Query: 438 RYLGHETSCTRYWTCWNGTATEQLASEGXCT 530
           R  G E   T  WT WNG  TE+      CT
Sbjct: 54  RIEGREIQYTVKWTNWNGGDTEEAERRLVCT 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,049,921
Number of Sequences: 27780
Number of extensions: 402107
Number of successful extensions: 1047
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)