Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0292
         (772 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48410.1 68418.m05986 glutamate receptor family protein (GLR1...    29   2.6  
At5g13290.2 68418.m01527 protein kinase family protein contains ...    29   4.5  

>At5g48410.1 68418.m05986 glutamate receptor family protein (GLR1.3)
           plant glutamate receptor family, PMID:11379626
          Length = 860

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 193 SSIWAHDVRFIAARITRTLVQRRPNILYMFFDKI 92
           S IWAHD+ F  AR    +  R PN+     ++I
Sbjct: 324 SGIWAHDIAFALARAAEVI--RMPNVTSTLLEEI 355


>At5g13290.2 68418.m01527 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 331

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 242 QVLGSD-NGQSVQYDCPNGLVFAGKHRGVTEGCDYPWRSN 358
           Q+LGSD NG+  +    NGLV A K  G  EG   P  S+
Sbjct: 122 QLLGSDLNGKYYKMVLDNGLVVAVKRLGSLEGVGSPESSS 161


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,033,551
Number of Sequences: 28952
Number of extensions: 369311
Number of successful extensions: 942
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)