Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0291
         (818 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    24   1.3  
EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    23   3.9  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   3.9  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   3.9  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   5.1  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   8.9  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    21   8.9  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   8.9  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   8.9  

>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 410 KHRTFGRREPSLSSQQDPPXKXXXKXXNHEPGS 508
           K R+FGR+  S+SS ++   +   K     P S
Sbjct: 58  KSRSFGRKRKSISSDEENSFQGKHKSRRKAPQS 90


>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 772 QVWGLXPRGAEVXGLXPGKLXP 707
           Q+W    RGAE+ GL P    P
Sbjct: 112 QLWIKQIRGAELGGLGPSASPP 133


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/36 (25%), Positives = 14/36 (38%)
 Frame = +2

Query: 455 QDPPXKXXXKXXNHEPGSRSSVTPGRTNEWLLSPXE 562
           Q PP +         PG+ ++  P     W+ S  E
Sbjct: 206 QQPPIQQQPNQGQQPPGNTAAALPSPLYPWMRSQFE 241


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/36 (25%), Positives = 14/36 (38%)
 Frame = +2

Query: 455 QDPPXKXXXKXXNHEPGSRSSVTPGRTNEWLLSPXE 562
           Q PP +         PG+ ++  P     W+ S  E
Sbjct: 208 QQPPIQQQPNQGQQPPGNTAAALPSPLYPWMRSQFE 243


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 749 PGXKPPNLEPFKG*PVCKPPPF 814
           PG  PP + PF      +PP F
Sbjct: 197 PGGAPPLVSPFLAAMAHRPPHF 218


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = -2

Query: 781 KGFQVWGLXPRGAEVXGLXPGKL 713
           KGF  W   P+GA      P  L
Sbjct: 62  KGFHPWKKSPQGAPSPSSTPSSL 84


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -2

Query: 814 KWWGFTYXLSFKGFQVWGLXPRGAE 740
           +W   T  L  +GF  WG   +  E
Sbjct: 28  RWLERTPGLELEGFNFWGKYQKAVE 52


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -2

Query: 814 KWWGFTYXLSFKGFQVWGLXPRGAE 740
           +W   T  L  +GF  WG   +  E
Sbjct: 188 RWLERTPGLELEGFNFWGKYQKAVE 212


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -2

Query: 814 KWWGFTYXLSFKGFQVWGLXPRGAE 740
           +W   T  L  +GF  WG   +  E
Sbjct: 188 RWLERTPGLELEGFNFWGKYQKAVE 212


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,931
Number of Sequences: 336
Number of extensions: 3387
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22414104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)