Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0291
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    42   1e-04
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   5.6  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   9.8  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 26/61 (42%), Positives = 34/61 (55%)
 Frame = +2

Query: 41  ALLSVSDKTGLLSLAKSLSECGLQLIXXXXXXXXXXXXPASQFKMCRTSRRAPEMLGGRV 220
           ALLSV DKTGLL LAK+L+  G++L+               +     +   APE+LGGRV
Sbjct: 3   ALLSVYDKTGLLELAKALTSKGVKLL-GSGGTAKMIRESGMEVADVSSITNAPEILGGRV 61

Query: 221 K 223
           K
Sbjct: 62  K 62



 Score = 31.1 bits (67), Expect = 0.20
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +1

Query: 145 LRNAGLTVQDVSDITKSTGDARRSGEKLYHPAVHAGI 255
           +R +G+ V DVS IT +  +      K  HPAVH GI
Sbjct: 37  IRESGMEVADVSSITNAP-EILGGRVKTLHPAVHGGI 72


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 581 NHSIPERTFGGNXRARRXKPPXKGVSTPLTFRDLMEPSAHN 703
           NHS PERTF  +  A+   P  KG +T    R+  + S H+
Sbjct: 138 NHSTPERTFASD--AKNHSP--KGPTTTSFSRNETQSSPHS 174


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 289 HEXVRKYEDDKAWVVCKHVPRSSRRY 366
           H+  ++ E D+ W   +H P++ RRY
Sbjct: 48  HQAFQEDEGDEDWEEEEHKPKAKRRY 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,341
Number of Sequences: 5004
Number of extensions: 54531
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)