Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0291
         (818 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1174 - 26696869-26698191                                         29   4.4  
11_04_0091 - 13392864-13392950,13393534-13393579,13393706-133938...    29   5.9  
01_01_0956 + 7505206-7505322,7505860-7506723,7506841-7507260,750...    29   5.9  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    28   7.8  

>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 743 RPPGXKPPNLEPFKG*PVCKPPPFP 817
           RPP  KPP ++P    P   PPP P
Sbjct: 197 RPPSVKPPVVQPKPQPPPTLPPPSP 221


>11_04_0091 -
           13392864-13392950,13393534-13393579,13393706-13393819,
           13394135-13394256,13394360-13394431,13395663-13395812,
           13399258-13399341,13399459-13399560,13399634-13399671,
           13399762-13399864,13399978-13400389,13400493-13400671
          Length = 502

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = +1

Query: 103 WPAVDCQWRYRHGRLRNAGLTVQDVSDITKST----GDARRSGEKLYHPAVHAG 252
           +P VD  WR  H   ++AG T+   +D+T +T    G    SGE  Y    H G
Sbjct: 442 YPIVD-DWRAWHIDGQSAGFTITYANDLTFATVKFIGQGGSSGEAHYGRTCHRG 494


>01_01_0956 +
           7505206-7505322,7505860-7506723,7506841-7507260,
           7508091-7508342,7508696-7508953,7509798-7509877,
           7509959-7510070,7510492-7510541,7511070-7511171,
           7511215-7511276,7511888-7511928
          Length = 785

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = +2

Query: 695 AHNSGX*LSRXKAXYFRPPGXKPPNLEPFKG*PVCKPPPFP 817
           AHNSG   S        PPG +P    PF+G  V   P FP
Sbjct: 359 AHNSGSSRSFFNQPDVLPPGMQPNLHLPFQGPNVAHLPNFP 399


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +2

Query: 326 GWSVNMYPVRPDGIXSPXREPVXGRGSXKHRTFGRREPSLSSQQDPPXKXXXK 484
           G S   +P    G+ +P   P+ GRG     +   R   L+ Q +PP K   K
Sbjct: 786 GASGRPHPPSSKGLNAPAPPPLLGRGREATGSAKGRGIGLAQQSNPPKKASLK 838


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,898,143
Number of Sequences: 37544
Number of extensions: 440147
Number of successful extensions: 926
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)