Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0291
         (818 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   8e-04
SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32)                   28   7.9  
SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 28   7.9  

>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 26/64 (40%), Positives = 33/64 (51%)
 Frame = +2

Query: 32  GKLALLSVSDKTGLLSLAKSLSECGLQLIXXXXXXXXXXXXPASQFKMCRTSRRAPEMLG 211
           G LALLSVS+K GL+  AK L + G +L+                  +   +  APEMLG
Sbjct: 33  GSLALLSVSNKKGLVEFAKQLHDLGFRLVASGGTANAIRNAGIPVRDVSEIT-GAPEMLG 91

Query: 212 GRVK 223
           GRVK
Sbjct: 92  GRVK 95



 Score = 35.5 bits (78), Expect = 0.052
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = +1

Query: 145 LRNAGLTVQDVSDITKSTGDARRSGEKLYHPAVHAGI 255
           +RNAG+ V+DVS+IT +  +      K  HPAVH GI
Sbjct: 70  IRNAGIPVRDVSEITGAP-EMLGGRVKTLHPAVHGGI 105


>SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32)
          Length = 1074

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 21/68 (30%), Positives = 23/68 (33%)
 Frame = +2

Query: 326 GWSVNMYPVRPDGIXSPXREPVXGRGSXKHRTFGRREPSLSSQQDPPXKXXXKXXNHEPG 505
           G+     P    GI  P R P    G    RT GRR P       PP        +  PG
Sbjct: 493 GYRPGYIPPFVPGIIHPGRRPGWRPGGIPGRTPGRR-PGGRPGNIPPFVPGLIIPSRRPG 551

Query: 506 SRSSVTPG 529
            R    PG
Sbjct: 552 KRPGPRPG 559


>SB_46304| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 645

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 13  KNYGV-KWKTSSSQRFRQDGSTLVSKEP 93
           KN  V +W T  ++R+R+DGS ++  EP
Sbjct: 328 KNITVGQWHTVVAERYRRDGSLILDSEP 355


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,893,508
Number of Sequences: 59808
Number of extensions: 461814
Number of successful extensions: 889
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)