Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0291
         (818 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical pr...    43   2e-04
AL032644-4|CAA21665.1|  490|Caenorhabditis elegans Hypothetical ...    28   9.2  

>U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical
           protein C55F2.1b protein.
          Length = 594

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 27/68 (39%), Positives = 33/68 (48%)
 Frame = +2

Query: 20  MASNGKLALLSVSDKTGLLSLAKSLSECGLQLIXXXXXXXXXXXXPASQFKMCRTSRRAP 199
           M     LA++SVSDKTGL+ LA  L   GL LI                  +   + + P
Sbjct: 1   MTDGKSLAIISVSDKTGLIPLAHGLVSAGLTLIASGGTAKAIRDQGIDVHDVADVT-KFP 59

Query: 200 EMLGGRVK 223
           EMLGGRVK
Sbjct: 60  EMLGGRVK 67



 Score = 33.5 bits (73), Expect = 0.19
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +1

Query: 145 LRNAGLTVQDVSDITKSTGDARRSGEKLYHPAVHAGI*LDYPDSDQ 282
           +R+ G+ V DV+D+TK   +      K  HPAVH GI     +SD+
Sbjct: 42  IRDQGIDVHDVADVTKFP-EMLGGRVKTLHPAVHGGILARDTESDR 86


>AL032644-4|CAA21665.1|  490|Caenorhabditis elegans Hypothetical
           protein Y51H1A.4 protein.
          Length = 490

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = -3

Query: 546 SHSLVRPGVTDERDPGSWXFXFXXXXXGGSCCDDREGSRR-PNVRCFXEPRPXTG 385
           SH ++ PG  DE D   W F           CD+R  + R  +  C     P TG
Sbjct: 413 SHPMMAPGSEDEEDEMHWCFCNEKSYGDMVQCDNRHCTLRWFHYPCIGMVEPPTG 467


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,293,160
Number of Sequences: 27780
Number of extensions: 334094
Number of successful extensions: 660
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)