Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0291
         (818 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62200.1 68416.m06988 expressed protein contains Pfam profile...    32   0.40 
At5g24350.1 68418.m02870 expressed protein weak similarity to ne...    30   1.6  
At4g17490.1 68417.m02617 ethylene-responsive element-binding pro...    30   2.1  
At1g61080.1 68414.m06877 proline-rich family protein                   29   4.9  
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t...    28   6.5  
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR...    28   8.6  

>At3g62200.1 68416.m06988 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 673

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +2

Query: 413 HRTFGRREPSLSSQQDPPXKXXXKXXNHEPGSRSSVTPGRTNEWLLSPXENP 568
           H  FG  EPS+S+ + PP        N  PG+     P   N++   P   P
Sbjct: 255 HEFFGTSEPSVSTSRPPPPNLPSSNVNTFPGN-VMTNPQNQNQYTYPPRPGP 305


>At5g24350.1 68418.m02870 expressed protein weak similarity to
           neuroblastoma-amplified protein [Homo sapiens]
           GI:4337460
          Length = 2376

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 340 VYRPPTLYHLRTF*RXHVFLGQSRDNRAKSQ--HVPLDGKVFHPTSEH 203
           +Y  P +  ++ +   H+FL +S    AKS   +V  D   FH TSEH
Sbjct: 376 IYSMPVVERVQKY-EGHIFLLESSTQEAKSALANVDRDASEFHHTSEH 422


>At4g17490.1 68417.m02617 ethylene-responsive element-binding
           protein, putative similar to SP|O80341 Ethylene
           responsive element binding factor 5 (AtERF5)
           {Arabidopsis thaliana}
          Length = 282

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 23/114 (20%), Positives = 44/114 (38%)
 Frame = +2

Query: 227 FTIQRYMLGFSSIIPTLTKEDMXTSESTKMIKRGWSVNMYPVRPDGIXSPXREPVXGRGS 406
           F I++Y+L   S +PT    +   ++ T   + G+  + +  +P+ I     +P      
Sbjct: 11  FLIKKYLLDELSPLPTTATTNRWMNDFTSFDQTGFEFSEFETKPEIIDLVTPKPEIFDFD 70

Query: 407 XKHRTFGRREPSLSSQQDPPXKXXXKXXNHEPGSRSSVTPGRTNEWLLSPXENP 568
            K         S + Q +PP        N +P  +  + P    +W+     NP
Sbjct: 71  VKSEIPSESNDSFTFQSNPPRVTVQS--NRKPPLK--IAPPNRTKWIQFATGNP 120


>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 737 YFRPPGXKPPNLEPFKG*PVCKPPPFP 817
           +F PP   PP  +P KG     PPP P
Sbjct: 489 HFAPPPPTPPAFKPLKGSAPPPPPPPP 515


>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
           Lycopersicon esculentum, proline-rich cell wall protein
           [Medicago sativa] GI:3818416; contains Pfam profile
           PF00234 Protease inhibitor/seed storage/LTP family
          Length = 334

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 743 RPPGXKPPNLEPFKG*PVCKPPPFP 817
           +PP  KPP ++P    P  KP P P
Sbjct: 61  KPPTPKPPTVKPHPKPPTVKPHPKP 85


>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
           protein, putative strong similarity to SP|O22315
           Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
           thaliana}; cDNA NCBI_gi:15810292 supports a truncated
           version while protein evidence supports a longer model.
          Length = 278

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 31/122 (25%), Positives = 43/122 (35%), Gaps = 6/122 (4%)
 Frame = +2

Query: 209 GGRVKNFTIQRYMLGFSSIIPTLTKEDMXTSESTKMIKRGWSVNMYPVRPDGIXSPXREP 388
           GG V    + R   G + I+   + EDM  +      +  +S     VR        R P
Sbjct: 143 GGEVCFSQVFRDGRGTTGIVDYTSYEDMKYALDDTEFRNAFSHEYVRVREYDSRRDSRSP 202

Query: 389 VXGRGSXKHRTFGR---REPSLSSQQDPPXKXXXKXXNHEPGSRSSVTP---GRTNEWLL 550
             GR   K R+ GR   R  S S  +        K     P   +S +P    R+    L
Sbjct: 203 SRGRSYSKSRSRGRSPSRSRSRSRSRSKSRSPKAKSLRRSPAKSTSRSPRSRSRSKSRSL 262

Query: 551 SP 556
           SP
Sbjct: 263 SP 264


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,734,947
Number of Sequences: 28952
Number of extensions: 324949
Number of successful extensions: 748
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)