Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0290
(704 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 169 4e-43
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 168 6e-43
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 168 6e-43
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 87 3e-18
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 77 3e-15
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 42 1e-04
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.007
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.007
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 30 0.28
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 29 0.86
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 26 6.0
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 169 bits (410), Expect = 4e-43
Identities = 103/218 (47%), Positives = 119/218 (54%)
Frame = +1
Query: 46 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 225
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 226 DKLKAERERGXXXXXXXXXXXXXXTMLPSLMLLDTEISSRT*SQXPLXADCAVLIVAAGT 405
DKLKAERERG + + + ADCAVLI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGT 120
Query: 406 GEFEALGGVXKS*ERSXP*ACLAXXXXXXXXXXXXXXXXXXXXXXXIQ*ARFXGIQEGVS 585
GEFEA G+ K ++ A LA ARF I + S
Sbjct: 121 GEFEA--GISKD-GQTREHALLAYTLGVKQLIVAVNKMDTTGWSQ----ARFEEIVKETS 173
Query: 586 SYIKKIGYKPSCCRFVPHFWMARGQHXWGLQXKMPWVQ 699
++IKK+G+ P FVP +G + MPW Q
Sbjct: 174 NFIKKVGFNPKTVPFVPVSGF-QGDNMIEPTTNMPWYQ 210
Score = 73.7 bits (173), Expect = 2e-14
Identities = 33/37 (89%), Positives = 34/37 (91%)
Frame = +3
Query: 255 ITIXIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 365
ITI IALWKFET KY VT+IDAPGHRDFIKNMITGTS
Sbjct: 71 ITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTS 107
Score = 35.9 bits (79), Expect = 0.006
Identities = 24/74 (32%), Positives = 35/74 (47%)
Frame = +2
Query: 443 KNGXTREHALLRFXPXCXTAHRXVKPNGFPLEPPYSEPDLXESRKEYPHTSRRLATNPAA 622
K+G TREHALL + V N +S+ E KE + +++ NP
Sbjct: 129 KDGQTREHALLAYT--LGVKQLIVAVNKMDTTG-WSQARFEEIVKETSNFIKKVGFNPKT 185
Query: 623 VASCPISGWXGDNI 664
V P+SG+ GDN+
Sbjct: 186 VPFVPVSGFQGDNM 199
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 168 bits (409), Expect = 6e-43
Identities = 102/218 (46%), Positives = 119/218 (54%)
Frame = +1
Query: 46 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 225
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 226 DKLKAERERGXXXXXXXXXXXXXXTMLPSLMLLDTEISSRT*SQXPLXADCAVLIVAAGT 405
DKLKAERERG + + + ADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 406 GEFEALGGVXKS*ERSXP*ACLAXXXXXXXXXXXXXXXXXXXXXXXIQ*ARFXGIQEGVS 585
GEFEA G+ K ++ A LA ARF I + S
Sbjct: 121 GEFEA--GISKD-GQTREHALLAYTLGVKQLIVAVNKMDTTGWSQ----ARFEEIVKETS 173
Query: 586 SYIKKIGYKPSCCRFVPHFWMARGQHXWGLQXKMPWVQ 699
++IKK+G+ P FVP +G + MPW Q
Sbjct: 174 NFIKKVGFNPKTVPFVPVSGF-QGDNMIEPTTNMPWYQ 210
Score = 73.7 bits (173), Expect = 2e-14
Identities = 33/37 (89%), Positives = 34/37 (91%)
Frame = +3
Query: 255 ITIXIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 365
ITI IALWKFET KY VT+IDAPGHRDFIKNMITGTS
Sbjct: 71 ITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTS 107
Score = 35.9 bits (79), Expect = 0.006
Identities = 24/74 (32%), Positives = 35/74 (47%)
Frame = +2
Query: 443 KNGXTREHALLRFXPXCXTAHRXVKPNGFPLEPPYSEPDLXESRKEYPHTSRRLATNPAA 622
K+G TREHALL + V N +S+ E KE + +++ NP
Sbjct: 129 KDGQTREHALLAYT--LGVKQLIVAVNKMDTTG-WSQARFEEIVKETSNFIKKVGFNPKT 185
Query: 623 VASCPISGWXGDNI 664
V P+SG+ GDN+
Sbjct: 186 VPFVPVSGFQGDNM 199
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 168 bits (409), Expect = 6e-43
Identities = 102/218 (46%), Positives = 119/218 (54%)
Frame = +1
Query: 46 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 225
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 226 DKLKAERERGXXXXXXXXXXXXXXTMLPSLMLLDTEISSRT*SQXPLXADCAVLIVAAGT 405
DKLKAERERG + + + ADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 406 GEFEALGGVXKS*ERSXP*ACLAXXXXXXXXXXXXXXXXXXXXXXXIQ*ARFXGIQEGVS 585
GEFEA G+ K ++ A LA ARF I + S
Sbjct: 121 GEFEA--GISKD-GQTREHALLAYTLGVKQLIVAVNKMDTTGWSQ----ARFEEIVKETS 173
Query: 586 SYIKKIGYKPSCCRFVPHFWMARGQHXWGLQXKMPWVQ 699
++IKK+G+ P FVP +G + MPW Q
Sbjct: 174 NFIKKVGFNPKTVPFVPVSGF-QGDNMIEPTTNMPWYQ 210
Score = 73.7 bits (173), Expect = 2e-14
Identities = 33/37 (89%), Positives = 34/37 (91%)
Frame = +3
Query: 255 ITIXIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 365
ITI IALWKFET KY VT+IDAPGHRDFIKNMITGTS
Sbjct: 71 ITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTS 107
Score = 35.9 bits (79), Expect = 0.006
Identities = 24/74 (32%), Positives = 35/74 (47%)
Frame = +2
Query: 443 KNGXTREHALLRFXPXCXTAHRXVKPNGFPLEPPYSEPDLXESRKEYPHTSRRLATNPAA 622
K+G TREHALL + V N +S+ E KE + +++ NP
Sbjct: 129 KDGQTREHALLAYT--LGVKQLIVAVNKMDTTG-WSQARFEEIVKETSNFIKKVGFNPKT 185
Query: 623 VASCPISGWXGDNI 664
V P+SG+ GDN+
Sbjct: 186 VPFVPVSGFQGDNM 199
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 86.6 bits (205), Expect = 3e-18
Identities = 47/121 (38%), Positives = 64/121 (52%)
Frame = +1
Query: 58 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 237
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 238 AERERGXXXXXXXXXXXXXXTMLPSLMLLDTEISSRT*SQXPLXADCAVLIVAAGTGEFE 417
ERE+G L + AD VL+++A GEFE
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 355
Query: 418 A 420
A
Sbjct: 356 A 356
Score = 36.3 bits (80), Expect = 0.004
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 258 TIXIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 365
T+ + FET +++DAPGH+ ++ NMI G S
Sbjct: 303 TVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGAS 338
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 76.6 bits (180), Expect = 3e-15
Identities = 33/66 (50%), Positives = 46/66 (69%)
Frame = +1
Query: 58 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 237
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 238 AERERG 255
ER RG
Sbjct: 235 EERARG 240
Score = 41.5 bits (93), Expect = 1e-04
Identities = 19/37 (51%), Positives = 23/37 (62%)
Frame = +3
Query: 255 ITIXIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 365
+T+ +A FE+ K I DAPGHRDFI MI G S
Sbjct: 241 VTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGAS 277
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +3
Query: 255 ITIXIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 365
ITI A ++ET+ + +D PGH D+IKNMITG +
Sbjct: 102 ITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAA 138
Score = 35.1 bits (77), Expect = 0.010
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 52 KEKTHINIVVIGHVDSGKSTTTGHLIYKC 138
++K H+NI IGHVD GK+T T I KC
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 46 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 141
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 46 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 141
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 30.3 bits (65), Expect = 0.28
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +1
Query: 70 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 249
NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 250 RG 255
+G
Sbjct: 111 KG 112
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3
Query: 282 FETSKYYVTIIDAPGHRDF 338
FE S Y + IID PGH DF
Sbjct: 141 FEKS-YNINIIDTPGHIDF 158
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 28.7 bits (61), Expect = 0.86
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 70 NIVVIGHVDSGKSTTTGHLIYKCG 141
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 255 ITIXIALWKFETSKYYVTIIDAPGHRDF 338
ITI A F + +ID PGH DF
Sbjct: 79 ITINSAAISFTWRNQRINLIDTPGHADF 106
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 232 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSNDQWWWT 104
V +PK I I++ F P S S C+Y S+D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,673
Number of Sequences: 5004
Number of extensions: 49240
Number of successful extensions: 173
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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