Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0290
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   1e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 77   1e-14
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           48   7e-06
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              46   4e-05
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.39 
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.69 
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  

>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +1

Query: 46  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 192
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 34/37 (91%), Positives = 35/37 (94%)
 Frame = +3

Query: 255 ITIXIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 365
           ITI IALWKFET KYYVT+IDAPGHRDFIKNMITGTS
Sbjct: 23  ITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTS 59



 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 22/22 (100%), Positives = 22/22 (100%)
 Frame = +1

Query: 190 MGKGSFKYAWVLDKLKAERERG 255
           MGKGSFKYAWVLDKLKAERERG
Sbjct: 1   MGKGSFKYAWVLDKLKAERERG 22


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 28/96 (29%), Positives = 44/96 (45%)
 Frame = +1

Query: 130 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGXXXXXXXXXXXXXXTMLP 309
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER++G                  
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225

Query: 310 SLMLLDTEISSRT*SQXPLXADCAVLIVAAGTGEFE 417
            L     +            AD  VL+++A  GEFE
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFE 261



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +3

Query: 258 TIXIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 365
           T+ +    F+T   + T++DAPGH+ F+ NMI+G +
Sbjct: 209 TVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGAT 244


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 17/33 (51%), Positives = 25/33 (75%)
 Frame = +3

Query: 267 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 365
           + L +F+T    +T++DAPGH+DFI NMITG +
Sbjct: 3   VGLTRFQTKNKVITLMDAPGHKDFIPNMITGAA 35


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +1

Query: 46  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 141
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 23/62 (37%), Positives = 28/62 (45%)
 Frame = +1

Query: 70   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 249
            N  ++ HVD GKST    L+   G I K +  K                 VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986

Query: 250  RG 255
            RG
Sbjct: 1987 RG 1988


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 61  THINIVVIGHVDSGKSTTTGHLIY 132
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,544,668
Number of Sequences: 59808
Number of extensions: 400550
Number of successful extensions: 950
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)