Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0289
         (727 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14153| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   5e-05
SB_35566| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_9920| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.1  

>SB_14153| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 293

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 32/94 (34%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
 Frame = +3

Query: 435 HHYYMXDEXXXHIDX*PSXAHVLDGXHP--IYXANVDASXNXTGGWRSAFXHRGIXPDGX 608
           +H YM D    HID  P  AH+LDG     +   N         G    F   GI PDG 
Sbjct: 88  YHSYMWDNFFKHIDILPENAHILDGNAADLVQECNQFEEKIKAAGGVDVFV-GGIGPDGH 146

Query: 609 IAXKETGVLPGVSEAHLXTXANKTLXAXKRXFXN 710
           IA  E G     S   + + A +T+ A  R F N
Sbjct: 147 IAFNEPG-SSLASRTRVKSLAKETIVANARFFDN 179



 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/21 (66%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +2

Query: 341 RRG-LSFQXVXTFNXDEYXGL 400
           +RG LSF+ V TFN DEY GL
Sbjct: 60  KRGELSFKYVKTFNMDEYVGL 80


>SB_35566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 520

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +3

Query: 522 YXANVDASXNXTGGW-RSAFXHRGIXPDGXIAXKETG 629
           Y    D +   TG W    + H G  PDG +  KE+G
Sbjct: 355 YVKATDNTVTETGLWINKMYPHLGASPDGLVVDKESG 391


>SB_9920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 601

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +3

Query: 522 YXANVDASXNXTGGW-RSAFXHRGIXPDGXIAXKETG 629
           Y    D +   TG W    + H G  PDG +  KE+G
Sbjct: 436 YVKATDNTVTETGLWINKMYPHLGASPDGLVVDKESG 472


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,129,905
Number of Sequences: 59808
Number of extensions: 255250
Number of successful extensions: 362
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)