Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0289
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81113-3|CAB03280.1|  267|Caenorhabditis elegans Hypothetical pr...    39   0.004

>Z81113-3|CAB03280.1|  267|Caenorhabditis elegans Hypothetical
           protein T03F6.3 protein.
          Length = 267

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
 Frame = +3

Query: 435 HHYYMXDEXXXHIDX*PSXAHVLDG---XHPIYXANVDASXNXTGGWRSAFXHRGIXPDG 605
           +H +M D    HID  P+  H+LDG    H       +     +GG        GI PDG
Sbjct: 84  YHSFMFDNFFRHIDINPANIHILDGNTSDHEKECEEYERKIKESGG--IDLFVGGIGPDG 141

Query: 606 XIAXKETGVLPGVSEAHLXTXANKTLXAXKRXF 704
            IA  E G     S   + T    T+ A  R F
Sbjct: 142 HIAFNEPG-SSLASRTRIKTLNEDTIQANARFF 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,804,341
Number of Sequences: 27780
Number of extensions: 194623
Number of successful extensions: 326
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)