Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0289
         (727 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01610.2 68417.m00211 cathepsin B-like cysteine protease, put...    28   5.5  
At4g01610.1 68417.m00210 cathepsin B-like cysteine protease, put...    28   5.5  
At5g13950.1 68418.m01631 expressed protein                             27   9.6  

>At4g01610.2 68417.m00211 cathepsin B-like cysteine protease,
           putative similar to cathepsin B-like cysteine proteinase
           GI:609175 from [Nicotiana rustica]; contains an
           unusually short, 5nt exon
          Length = 359

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 219 GPVGNDAGIFENYKTHSSGLLSHVSGDNI 133
           GPV     ++E++  + SG+  H++G NI
Sbjct: 255 GPVEVSFTVYEDFAHYKSGVYKHITGSNI 283


>At4g01610.1 68417.m00210 cathepsin B-like cysteine protease,
           putative similar to cathepsin B-like cysteine proteinase
           GI:609175 from [Nicotiana rustica]; contains an
           unusually short, 5nt exon
          Length = 359

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 219 GPVGNDAGIFENYKTHSSGLLSHVSGDNI 133
           GPV     ++E++  + SG+  H++G NI
Sbjct: 255 GPVEVSFTVYEDFAHYKSGVYKHITGSNI 283


>At5g13950.1 68418.m01631 expressed protein 
          Length = 939

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = -2

Query: 255 GELRDPXQDESGGPVGNDAGIFENY--KTHSSGLLSHVSGDNI 133
           GE  +P Q     P G D+GIF     K HS    S   GD I
Sbjct: 431 GESLNPNQSGDMAPDGEDSGIFSQISGKNHSPSKDSSSYGDQI 473


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,129,891
Number of Sequences: 28952
Number of extensions: 174918
Number of successful extensions: 257
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)