Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0288
(749 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 173 2e-43
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 172 2e-43
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 172 2e-43
SB_56| Best HMM Match : Actin (HMM E-Value=0) 172 2e-43
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 172 3e-43
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 170 9e-43
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 149 2e-36
SB_54| Best HMM Match : Actin (HMM E-Value=0) 80 2e-15
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 2e-11
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 59 4e-09
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 56 3e-08
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 35 0.081
SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57
SB_1624| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_43762| Best HMM Match : Pentaxin (HMM E-Value=1.4e-13) 29 3.0
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25) 29 4.0
SB_25899| Best HMM Match : Ribonuc_2-5A (HMM E-Value=0) 29 5.3
SB_22949| Best HMM Match : rve (HMM E-Value=1.2e-19) 29 5.3
SB_58386| Best HMM Match : rve (HMM E-Value=8.6e-26) 29 5.3
SB_33253| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_38098| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_34234| Best HMM Match : Galactosyl_T (HMM E-Value=0.0098) 28 9.3
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 173 bits (420), Expect = 2e-43
Identities = 79/83 (95%), Positives = 83/83 (100%)
Frame = -2
Query: 511 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 332
LYANTV+SGGTTMYPG+ADRMQKEI+ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 267 LYANTVMSGGTTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 326
Query: 331 QQMWISKQEYDESGPSIVHRKCF 263
QQMWISKQEYDESGP+IVHRKCF
Sbjct: 327 QQMWISKQEYDESGPAIVHRKCF 349
Score = 132 bits (320), Expect = 2e-31
Identities = 61/72 (84%), Positives = 65/72 (90%)
Frame = -3
Query: 726 LTWEQKLATVXSSSSFEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYN 547
L +EQ++ T SSSS EKSYELPDGQVITIGNERFRCPEAL QPSFLGME+ GIHETTYN
Sbjct: 195 LDFEQEMQTAASSSSIEKSYELPDGQVITIGNERFRCPEALLQPSFLGMESSGIHETTYN 254
Query: 546 SIMKCDVDIRKD 511
SIMKCDVDIRKD
Sbjct: 255 SIMKCDVDIRKD 266
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 172 bits (419), Expect = 2e-43
Identities = 80/83 (96%), Positives = 82/83 (98%)
Frame = -2
Query: 511 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 332
LYANTVLSGGTTMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 256 LYANTVLSGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTF 315
Query: 331 QQMWISKQEYDESGPSIVHRKCF 263
QQMWISKQEYDESGP+IVHRKCF
Sbjct: 316 QQMWISKQEYDESGPAIVHRKCF 338
Score = 134 bits (325), Expect = 5e-32
Identities = 61/72 (84%), Positives = 66/72 (91%)
Frame = -3
Query: 726 LTWEQKLATVXSSSSFEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYN 547
L +EQ++ T SSSS EKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+ GIHETTYN
Sbjct: 184 LDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYN 243
Query: 546 SIMKCDVDIRKD 511
SIMKCDVDIRKD
Sbjct: 244 SIMKCDVDIRKD 255
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 172 bits (419), Expect = 2e-43
Identities = 80/83 (96%), Positives = 82/83 (98%)
Frame = -2
Query: 511 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 332
LYANTVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 294 LYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTF 353
Query: 331 QQMWISKQEYDESGPSIVHRKCF 263
QQMWISKQEYDESGPSIVHRKCF
Sbjct: 354 QQMWISKQEYDESGPSIVHRKCF 376
Score = 134 bits (325), Expect = 5e-32
Identities = 61/72 (84%), Positives = 66/72 (91%)
Frame = -3
Query: 726 LTWEQKLATVXSSSSFEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYN 547
L +EQ++ T SSSS EKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+ GIHETTYN
Sbjct: 222 LDFEQEMETAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYN 281
Query: 546 SIMKCDVDIRKD 511
SIMKCDVDIRKD
Sbjct: 282 SIMKCDVDIRKD 293
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 172 bits (419), Expect = 2e-43
Identities = 80/83 (96%), Positives = 82/83 (98%)
Frame = -2
Query: 511 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 332
LYANTVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 293 LYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTF 352
Query: 331 QQMWISKQEYDESGPSIVHRKCF 263
QQMWISKQEYDESGPSIVHRKCF
Sbjct: 353 QQMWISKQEYDESGPSIVHRKCF 375
Score = 134 bits (325), Expect = 5e-32
Identities = 61/72 (84%), Positives = 66/72 (91%)
Frame = -3
Query: 726 LTWEQKLATVXSSSSFEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYN 547
L +EQ++ T SSSS EKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+ GIHETTYN
Sbjct: 221 LDFEQEMQTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYN 280
Query: 546 SIMKCDVDIRKD 511
SIMKCDVDIRKD
Sbjct: 281 SIMKCDVDIRKD 292
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 172 bits (418), Expect = 3e-43
Identities = 80/83 (96%), Positives = 82/83 (98%)
Frame = -2
Query: 511 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 332
LYANTVLSGG+TMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 294 LYANTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTF 353
Query: 331 QQMWISKQEYDESGPSIVHRKCF 263
QQMWISKQEYDESGPSIVHRKCF
Sbjct: 354 QQMWISKQEYDESGPSIVHRKCF 376
Score = 135 bits (326), Expect = 4e-32
Identities = 61/72 (84%), Positives = 66/72 (91%)
Frame = -3
Query: 726 LTWEQKLATVXSSSSFEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYN 547
L +EQ++ T SSSS EKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+ GIHETTYN
Sbjct: 222 LDFEQEMTTAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYN 281
Query: 546 SIMKCDVDIRKD 511
SIMKCDVDIRKD
Sbjct: 282 SIMKCDVDIRKD 293
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 170 bits (414), Expect = 9e-43
Identities = 79/83 (95%), Positives = 82/83 (98%)
Frame = -2
Query: 511 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 332
LYANTVLSGG+TM+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTF
Sbjct: 293 LYANTVLSGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTF 352
Query: 331 QQMWISKQEYDESGPSIVHRKCF 263
QQMWISKQEYDESGPSIVHRKCF
Sbjct: 353 QQMWISKQEYDESGPSIVHRKCF 375
Score = 135 bits (327), Expect = 3e-32
Identities = 61/72 (84%), Positives = 67/72 (93%)
Frame = -3
Query: 726 LTWEQKLATVXSSSSFEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYN 547
L +EQ++AT +SSS EKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+ GIHETTYN
Sbjct: 221 LDFEQEMATAAASSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYN 280
Query: 546 SIMKCDVDIRKD 511
SIMKCDVDIRKD
Sbjct: 281 SIMKCDVDIRKD 292
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 149 bits (362), Expect = 2e-36
Identities = 67/83 (80%), Positives = 76/83 (91%)
Frame = -2
Query: 511 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 332
LY+N VLSGG+TM+PGIADRMQKEI LA ++MK+K+IAPPERKYSVWIGGSILASLSTF
Sbjct: 67 LYSNCVLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTF 126
Query: 331 QQMWISKQEYDESGPSIVHRKCF 263
QQMWI+K+EY E GP IVHRKCF
Sbjct: 127 QQMWIAKEEYHEYGPPIVHRKCF 149
Score = 110 bits (265), Expect = 1e-24
Identities = 49/61 (80%), Positives = 54/61 (88%)
Frame = -3
Query: 693 SSSSFEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRK 514
+S EK+YELPDGQVI+IGNERFRCPEA+FQP+FLGMEA GIHE YN IMKCDVDIRK
Sbjct: 6 NSPILEKTYELPDGQVISIGNERFRCPEAMFQPAFLGMEAPGIHEAIYNCIMKCDVDIRK 65
Query: 513 D 511
D
Sbjct: 66 D 66
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 80.2 bits (189), Expect = 2e-15
Identities = 36/72 (50%), Positives = 48/72 (66%)
Frame = -3
Query: 726 LTWEQKLATVXSSSSFEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYN 547
+ +E++L +S E Y LPDGQ I IG+ERFR E LFQPS LG + GIHE+ +
Sbjct: 2266 MDYERELKEAETSDDCEAPYMLPDGQSIRIGSERFRAAEPLFQPSLLGRDIDGIHESIFK 2325
Query: 546 SIMKCDVDIRKD 511
SI KCD+D+R +
Sbjct: 2326 SIKKCDIDLRAE 2337
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 66.9 bits (156), Expect = 2e-11
Identities = 30/70 (42%), Positives = 43/70 (61%)
Frame = -3
Query: 717 EQKLATVXSSSSFEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIM 538
EQKLA ++ + Y LPDG+V+ + ERF PEALFQP + +E G+ E +N+I
Sbjct: 230 EQKLAL--ETTVLVEQYTLPDGRVVKLSGERFEAPEALFQPHLINVEGVGVAELLFNTIQ 287
Query: 537 KCDVDIRKDF 508
D+D R +F
Sbjct: 288 AADIDTRSEF 297
Score = 47.6 bits (108), Expect = 1e-05
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Frame = -2
Query: 592 VLGYGSLRHPRDHI*LHHEVRRGHP*GLYANTVLSGGTTMYPGIADRMQKEITA-LAPST 416
VL GS +P L E+++ LY VL G T+ Q +TA
Sbjct: 302 VLSGGSTMYPGLPSRLEREIKQ-----LYLERVLKGDTSKLSSGMGMEQIPLTADYLLQK 356
Query: 415 MKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 290
KI+I PP RK+ V++GG++LA + W++++EY+E G
Sbjct: 357 FKIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 58.8 bits (136), Expect = 4e-09
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 16/99 (16%)
Frame = -2
Query: 511 LYANTVLSGGTTMYPGIADRMQKEITA----------------LAPSTMKIKIIAPPERK 380
LY N VLSGG+TM+ R+Q++I + P ++ ++I+ ++
Sbjct: 242 LYKNIVLSGGSTMFRDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQR 301
Query: 379 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 263
Y+VW GGS+LAS F + +K +YDE GPSI F
Sbjct: 302 YAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF 340
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -3
Query: 645 ITIGNERFRCPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRK 514
+ + ERF PE F P F + + E N I C +D+R+
Sbjct: 196 VDVAYERFLGPEIFFHPEFSNPDFTTPLSEVVDNVIQNCPIDVRR 240
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 56.0 bits (129), Expect = 3e-08
Identities = 23/61 (37%), Positives = 43/61 (70%), Gaps = 3/61 (4%)
Frame = -2
Query: 514 GLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKII---APPERKYSVWIGGSILAS 344
GL+ + +++GG T+ G +R+ +E+ + P +M++K+I + E++++ WIGGSILAS
Sbjct: 170 GLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILAS 229
Query: 343 L 341
L
Sbjct: 230 L 230
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Frame = -2
Query: 511 LYANTVLSGGTTMYPGIADRMQKEITALAPS--------TMKIKIIAPP-ERKYSVWIGG 359
L N VL GGT M PG R+ +EI L S +K+ PP + W+GG
Sbjct: 77 LAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANITAWLGG 136
Query: 358 SILASLSTFQQMWISKQEYDE 296
+I SL +++ Y +
Sbjct: 137 AIFGSLEVLADRSTTRERYQQ 157
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 34.7 bits (76), Expect = 0.081
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -3
Query: 693 SSSSFEKSYELPDGQVITIGNERFRCPEALFQPSFL 586
++ K Y LPDGQ+I+IG E E LF+P L
Sbjct: 863 TNEGLTKFYTLPDGQMISIGYECISSMEPLFRPDLL 898
>SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 31.9 bits (69), Expect = 0.57
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -3
Query: 615 PEALFQPSFLGMEACGIHET 556
PE +FQPS LG+E GI ET
Sbjct: 3 PEIIFQPSMLGLEQAGITET 22
>SB_1624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 427
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 126 RPALRPAVTITLITIISYVQLN 191
RP + PA T TLIT+I YV+++
Sbjct: 125 RPLMTPAKTGTLITVIDYVEID 146
>SB_43762| Best HMM Match : Pentaxin (HMM E-Value=1.4e-13)
Length = 207
Score = 29.5 bits (63), Expect = 3.0
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -3
Query: 705 ATVXSSSSFEKSYELPDGQVITIGNER 625
AT+ +SS ++K + +P G V+ IG ++
Sbjct: 109 ATIHASSGYQKGHSVPSGGVLVIGQDQ 135
>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
Length = 1097
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 692 PAVPSRSLTNFXTVRSSLSETKDSVAQRLSSNXRSWVWK 576
P + R + +F S+ SETK SV +R + + W+W+
Sbjct: 446 PFLKKRGIRHF----STKSETKASVVERFNRTFKGWMWR 480
>SB_25899| Best HMM Match : Ribonuc_2-5A (HMM E-Value=0)
Length = 603
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -2
Query: 682 LREVLRTSXRSGHHYRKRKIPLPR--GSLPTXVLGYGSLRHPR 560
LR++LR HHYR+ + R G++P + Y + R PR
Sbjct: 520 LRDLLRALRNKKHHYRELPDEVKRSLGTIPDEYVRYFTSRFPR 562
>SB_22949| Best HMM Match : rve (HMM E-Value=1.2e-19)
Length = 158
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 647 SSLSETKDSVAQRLSSNXRSWVWK 576
S+ SETK SV +R + + W+W+
Sbjct: 96 STKSETKASVVERFNRTSKEWMWR 119
>SB_58386| Best HMM Match : rve (HMM E-Value=8.6e-26)
Length = 212
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 647 SSLSETKDSVAQRLSSNXRSWVWK 576
S+ SETK SV +R + + W+W+
Sbjct: 93 STKSETKASVVERFNRTFKGWMWR 116
>SB_33253| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 647 SSLSETKDSVAQRLSSNXRSWVWK 576
S+ SETK SV +R + + W+W+
Sbjct: 439 STKSETKASVVERFNRTFKGWMWR 462
>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 502 NTVLSGGTTMYPGIADRMQKEITALAP 422
N ++GG TMY R+++E+ A+ P
Sbjct: 132 NVFVTGGNTMYNNFMARLERELLAIRP 158
>SB_38098| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 503
Score = 28.3 bits (60), Expect = 7.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 647 SSLSETKDSVAQRLSSNXRSWVWK 576
S+ SE K SV +R + ++W+W+
Sbjct: 193 STRSELKSSVVERFNRTLKTWIWR 216
>SB_34234| Best HMM Match : Galactosyl_T (HMM E-Value=0.0098)
Length = 1028
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +1
Query: 439 FPFAYGRRFQGTWWYHRTIRCWRKVLTDVHVALHDGVICGLVDAASFHTQERXLEESLWA 618
+P + R+ + W H CW K L + + + + ++ S+ R ++ + W
Sbjct: 602 YPRKFEWRYFASSWRHEPSPCWGKNLAVIQTGIPNITVI-TINCGSY----RSMKRNTWR 656
Query: 619 TE--SFVSDSDDL 651
E S SD+D+L
Sbjct: 657 LEKPSLTSDNDEL 669
>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 27.9 bits (59), Expect = 9.3
Identities = 30/118 (25%), Positives = 43/118 (36%)
Frame = -1
Query: 593 RSWVWKLAASTRPHITPS*SATWTSVRTLRQHRIVRWYHHVPWNRRPYAKGNHSSRPIDN 414
R+ W L A R H+ S T R++ + HVP + H P
Sbjct: 386 RTCYWALYAHYRAHVPRRYSLTHFRAHVPRRYLFTHFRAHVPGHYPLTHFRTHG--PGVT 443
Query: 413 ED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLETGVRRVWPLHCTQEVLLNARASLP 240
H S + R PL T V + GV R P C+Q +L + R+ +P
Sbjct: 444 RSLPHTCSWALPAHYRIHVPRRYPL---TTVHMFPGVTRSLPCTCSQALLAHYRSHVP 498
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,359,504
Number of Sequences: 59808
Number of extensions: 521449
Number of successful extensions: 1497
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1493
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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