Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0287
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    27   3.2  
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    27   3.2  
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma...    27   3.2  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    27   4.2  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    25   9.6  

>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = +1

Query: 379 EPPRLREXFFDAATEEREHANQAH*LPAHEGQADRLRNRPHHVRAPANTSWESGASALEH 558
           E    ++ FFD    +  HAN+A        +  +  N  H +R P+ +S      +L+ 
Sbjct: 559 EETNTKDEFFDVDAHDNNHANKA--------EPSQTANNVHEIREPSFSSEHKPQPSLKT 610

Query: 559 ALKLESDVT-NSIREVIKT 612
              + S  T  +I ++ KT
Sbjct: 611 TTDVSSPETKQNIADIRKT 629


>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
 Frame = +1

Query: 490 NRPHHVRAPANTSWES--GASALEHALKL------ESDVTNSIREVIKTCESSFQRL 636
           N P+H R P+N S  +  GA++ +  ++L      +S +++ ++     CE+S Q L
Sbjct: 65  NSPYHYRVPSNNSTRASFGAASTDTNVELPKINLPDSSLSSKLQSCKSACENSSQSL 121


>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 354

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 523 CWRGPVRDEVGYGACQLAPHEQVVNELGSRARVLQSQHRR 404
           C R  +RD     +  +A H+QV  E   RA +L+S+ +R
Sbjct: 187 CLRHEIRDIRPPESVVMAMHQQVSAERQKRAEILESEGKR 226


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +2

Query: 248 RHLRDEW---LTMEQTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXYSSMLR 418
           + LRD++   LTM Q C N+  KQ    + A  Q L+ G+      V R   +    +L 
Sbjct: 339 QELRDQYSLHLTMAQECMNIFEKQQLNLIGAIEQDLSTGSNVE-GKVPRSVLSELLPLLD 397

Query: 419 LKNASTRTKL 448
             NA   TK+
Sbjct: 398 EGNAEESTKI 407


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -2

Query: 221 GRS*GSNESEDSKENSPHLNFSYNHRFFDD--IQKNMC 114
           G S   N S+ + +N PHL+    ++ F+D  I K++C
Sbjct: 363 GESKLPNTSKQASQNLPHLDDELAYQRFEDQVIDKSVC 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,286
Number of Sequences: 5004
Number of extensions: 50476
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)