Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0287
         (810 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32...    47   2e-05
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30...    41   0.001
01_01_0955 - 7494486-7496327                                           29   4.4  
01_01_1154 - 9178427-9178738,9179819-9180874                           29   5.8  
05_04_0386 + 20822376-20822982,20823715-20824244,20824315-20825127     28   7.6  

>12_01_0039 -
           319871-319914,320021-320084,320198-320263,320397-320458,
           321211-321298,321401-321461,321542-321625,322332-322630
          Length = 255

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 44/167 (26%), Positives = 68/167 (40%), Gaps = 3/167 (1%)
 Frame = +2

Query: 287 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXYSSMLRLKNASTRTKLIDYLLM 466
           C   + +QI  E  AS  Y ++ AYF  D V   GFA +      +      KL+ Y  M
Sbjct: 91  CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150

Query: 467 RG---KLTGSVTDLITYGPPPTRRGRAAHQPSSTPSSWRVXXXXXXXXXXXXXXXXFNDX 637
           RG   +L   VT L  +  P   +G A +      +  ++                 ND 
Sbjct: 151 RGGRVRLQSIVTPLTEFDHP--EKGDALYAMELALALEKLVNEKLHNLHSVASRC--NDP 206

Query: 638 XLVDYLSGEFLDEQYXGQRDLAGXASXLKKXMDKHAASEIHLDKKLL 778
            L D++  EFL+EQ    + ++   + L++    H     H D+KLL
Sbjct: 207 QLTDFVESEFLEEQVEAIKKISEYVAQLRRVGKGHGV--WHFDQKLL 251


>11_01_0040 -
           304439-304482,304589-304652,304766-304831,305509-305640,
           305744-305804,305885-306018,306310-306654
          Length = 281

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 42/156 (26%), Positives = 61/156 (39%), Gaps = 3/156 (1%)
 Frame = +2

Query: 320 EVAASIQYLAMGAYFSIDTVNRPGFAXYSSMLRLKNASTRTKLIDYLLMRG---KLTGSV 490
           E  AS  Y ++ AYF  D V   GFA +      +      KLI Y  MRG   +L   V
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIV 193

Query: 491 TDLITYGPPPTRRGRAAHQPSSTPSSWRVXXXXXXXXXXXXXXXXFNDXXLVDYLSGEFL 670
           T L  +  P   +G A +          +                 ND  L D++  EFL
Sbjct: 194 TPLTEFDHP--EKGDALY--------GELLSACPIYVFYSMVASRCNDPQLTDFVESEFL 243

Query: 671 DEQYXGQRDLAGXASXLKKXMDKHAASEIHLDKKLL 778
           +EQ    + ++   + L++    H     H D+KLL
Sbjct: 244 EEQVEAIKKISEYVAQLRRVGKGHGV--WHFDQKLL 277


>01_01_0955 - 7494486-7496327
          Length = 613

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 523 CWRGPVRDEVGYGACQLAPHEQVVNELGSRARVLQS 416
           C+RG + +  G+    L P E  V ELGS  +V +S
Sbjct: 195 CYRGYLANAAGFRTIVLVPFETGVLELGSMQQVAES 230


>01_01_1154 - 9178427-9178738,9179819-9180874
          Length = 455

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 512 PPPTRRGRAAHQPSSTPSSWR 574
           PPP RR +A H  SST   W+
Sbjct: 76  PPPPRRKKAGHTSSSTRPRWQ 96


>05_04_0386 + 20822376-20822982,20823715-20824244,20824315-20825127
          Length = 649

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 484 LRNRPHHVRAPANTSWESGASALEHALKLESDVTNSIR 597
           +   P  VR+PA  S   G +AL  A  +  D+T S+R
Sbjct: 172 IEQSPEVVRSPAYYSGPDGKTALHAAALVSEDMTESLR 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,898,342
Number of Sequences: 37544
Number of extensions: 398373
Number of successful extensions: 1068
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)