Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0287
         (810 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.013
SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.022
SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.068
SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.090
SB_7534| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.090
SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)               33   0.27 
SB_43273| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_40178| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_56869| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 37.5 bits (83), Expect = 0.013
 Identities = 36/149 (24%), Positives = 56/149 (37%)
 Frame = +2

Query: 281 QTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXYSSMLRLKNASTRTKLIDYL 460
           + C   + KQI  E+ AS  YL+M  +F  D V  PGF  Y      +      KL+ + 
Sbjct: 197 EECEAGINKQINLELYASYAYLSMAFHFDRDDVALPGFHKYFLKASHEEREHAEKLMKFQ 256

Query: 461 LMRGKLTGSVTDLITYGPPPTRRGRAAHQPSSTPSSWRVXXXXXXXXXXXXXXXXFNDXX 640
             RG   G +  ++     P +        S   +                      D  
Sbjct: 257 NERG---GRI--VLQDIKKPEKDEWGCGMDSIQVALDLEKHVNQALLDLHKIAEKHGDAQ 311

Query: 641 LVDYLSGEFLDEQYXGQRDLAGXASXLKK 727
           + D++ G FL EQ    ++LAG  + LK+
Sbjct: 312 MTDFIEGNFLTEQVEAIKELAGHLTNLKR 340


>SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 35/143 (24%), Positives = 54/143 (37%)
 Frame = +2

Query: 299 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXYSSMLRLKNASTRTKLIDYLLMRGKL 478
           + KQI  E+ AS  Y++M  +F  D V  PGF  Y      +      KL  + L RG  
Sbjct: 135 VNKQINLELYASYVYMSMAYHFDRDDVALPGFHKYFMKASHEEREHAEKLAKFQLQRG-- 192

Query: 479 TGSVTDLITYGPPPTRRGRAAHQPSSTPSSWRVXXXXXXXXXXXXXXXXFNDXXLVDYLS 658
            G +  ++     P R      Q +   +                      D  + D+L 
Sbjct: 193 -GRI--VLQDIKRPERDDWGCGQDAIQAALDLEKHVNQALLDLHKVAEKHGDSQMQDWLE 249

Query: 659 GEFLDEQYXGQRDLAGXASXLKK 727
             +L EQ    ++LAG  + LK+
Sbjct: 250 SHYLTEQVEAIKELAGHLTNLKR 272


>SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 35.1 bits (77), Expect = 0.068
 Identities = 35/143 (24%), Positives = 53/143 (37%)
 Frame = +2

Query: 299 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXYSSMLRLKNASTRTKLIDYLLMRGKL 478
           + KQI  E+ AS  Y++M  +F  D V  PGF  Y      +      KL  + L RG  
Sbjct: 150 VNKQINLELYASYVYMSMAFHFDRDDVALPGFHKYFMEASHEEREHAEKLAKFQLQRG-- 207

Query: 479 TGSVTDLITYGPPPTRRGRAAHQPSSTPSSWRVXXXXXXXXXXXXXXXXFNDXXLVDYLS 658
            G +  ++     P R      Q     +                      D  + D+L 
Sbjct: 208 -GRI--VLQDIKRPERDDWGCGQDVIQAALDLEKHVNQALHDLHKVAEKHGDSQMQDWLE 264

Query: 659 GEFLDEQYXGQRDLAGXASXLKK 727
             +L EQ    ++LAG  + LK+
Sbjct: 265 SHYLTEQVEAIKELAGHMTNLKR 287


>SB_29575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 34.7 bits (76), Expect = 0.090
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 493 RPHHVRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESS 624
           R H  + P    W SG  A++ AL LE  V  ++ E+ KT E +
Sbjct: 59  REHAEKKPERDEWGSGLEAMQTALDLEKHVNQALIELEKTAEKN 102



 Score = 31.9 bits (69), Expect = 0.63
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 281 QTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGF 394
           + C   + KQI  E+ AS  Y +M  YF  + V+ PGF
Sbjct: 10  EECEAGINKQINLELYASYVYTSMACYFDREDVHLPGF 47


>SB_7534| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 34.7 bits (76), Expect = 0.090
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = +2

Query: 299 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXYSSMLRLKNASTRTKLIDYLLMRG 472
           + KQI  E+ AS  Y++M  +F  D V  PGF  Y      +      KL  + L RG
Sbjct: 18  VNKQINLELYASYVYMSMAFHFDRDDVALPGFHKYFIKASHEEREHAEKLAKFQLQRG 75


>SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)
          Length = 126

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 299 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGF 394
           + KQI +E+ A   YL+M  +F  D +N PGF
Sbjct: 38  INKQINKELYAHYTYLSMAFHFDRDDINLPGF 69


>SB_43273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +1

Query: 406 FDAATEEREHANQAH*LPAHEGQADRLRNRPHHVRAPANTSWESGASALEHALK 567
           +D    E++HAN  + LP   G    LR    + +AP+     SG  A++H+ K
Sbjct: 5   WDRTRPEKQHANHTYGLPNRYGSTRLLRKAVKNPKAPSTDI--SGEYAVQHSCK 56


>SB_40178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +1

Query: 406 FDAATEEREHANQAH*LPAHEGQADRLRNRPHHVRAPANTSWESGASALEHALK 567
           +D    E++HAN  + LP   G    LR    + +AP  ++  SG  A++H+ K
Sbjct: 5   WDRTRPEKKHANHTYGLPNRYGSTMLLRKTVKNPKAP--STHISGEYAVQHSCK 56


>SB_56869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 406 FDAATEEREHANQAH*LPAHEGQADRLRNRPHHVRAPANTSWESGASALEHALKL 570
           +D    E++HAN  + LP   G    LR    + +AP+     S   A++H+ K+
Sbjct: 5   WDRTRPEKQHANHTYGLPNRYGSTRLLRKAVKNPKAPSTDI--SREYAVQHSCKV 57


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,192,437
Number of Sequences: 59808
Number of extensions: 421405
Number of successful extensions: 944
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)