Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0287
         (810 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin prot...    33   0.24 
Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical pr...    30   2.3  
AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical ...    29   3.0  
AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical ...    29   3.0  
AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical ...    29   3.0  
AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin pro...    28   6.9  

>AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin protein
           2 protein.
          Length = 170

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 35/143 (24%), Positives = 53/143 (37%)
 Frame = +2

Query: 299 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXYSSMLRLKNASTRTKLIDYLLMRGKL 478
           + KQI  E+ AS  YL+M  YF  D V  P  A +      +     T+L+    +RG  
Sbjct: 16  VNKQINIELYASYVYLSMSFYFDRDDVALPNIAKFFKEQSDEEREHATELMRVQNLRG-- 73

Query: 479 TGSVTDLITYGPPPTRRGRAAHQPSSTPSSWRVXXXXXXXXXXXXXXXXFNDXXLVDYLS 658
            G V       P     G A     +  +  +                  ND  L D++ 
Sbjct: 74  -GRVVLQDIQKPENDEWGTALKAFEAALALEK--FNNESLLKLHSTAGNHNDAHLTDFIE 130

Query: 659 GEFLDEQYXGQRDLAGXASXLKK 727
            ++LDEQ     + A   + LK+
Sbjct: 131 EKYLDEQVKSINEFARMVANLKR 153


>Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical
           protein F58G11.2 protein.
          Length = 960

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 498 SSRTGPRQHVVGERRISPRARPQAGE*RHQQHPGGHQDLREQLS 629
           +S++ PR H  G+ R S  A  +  + R+  H GGH   R Q S
Sbjct: 204 NSQSSPRSHQGGQDRYS--APKEDNQRRYDNHQGGHDSYRGQNS 245


>AF025472-7|AAB71069.1| 1466|Caenorhabditis elegans Hypothetical
           protein ZK250.9 protein.
          Length = 1466

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 272 TMEQTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXYSSMLR 418
           +M   C N   +  Q EV++S  ++ M  YF + T  +  F+ Y   LR
Sbjct: 131 SMRCVCKNCNARFFQGEVSSSNDHINMCCYFGLTTTLQDRFSNYPDELR 179


>AC024749-1|AAF60434.1| 1466|Caenorhabditis elegans Hypothetical
           protein Y16E11A.2 protein.
          Length = 1466

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 272 TMEQTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXYSSMLR 418
           +M   C N   +  Q EV++S  ++ M  YF + T  +  F+ Y   LR
Sbjct: 131 SMRCVCKNCNARFFQGEVSSSNDHINMCCYFGLTTTLQDRFSNYPDELR 179


>AC006648-1|AAF39854.1| 1486|Caenorhabditis elegans Hypothetical
           protein F59H6.5 protein.
          Length = 1486

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 272 TMEQTCYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXYSSMLR 418
           +M   C N   +  Q EV++S  ++ M  YF + T  +  F+ Y   LR
Sbjct: 131 SMRCVCKNCNARFFQGEVSSSNDHINMCCYFGLTTTLQDRFSNYPDELR 179


>AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin
           protein 1 protein.
          Length = 170

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 31/143 (21%), Positives = 52/143 (36%)
 Frame = +2

Query: 299 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAXYSSMLRLKNASTRTKLIDYLLMRGKL 478
           + KQI  E+ AS  YL+M A+F  D +     A +      +     T+L+    +RG  
Sbjct: 16  VNKQINVELYASYVYLSMSAHFDRDDIALRNIAKFFKEQSDEERGHATELMRIQAVRG-- 73

Query: 479 TGSVTDLITYGPPPTRRGRAAHQPSSTPSSWRVXXXXXXXXXXXXXXXXFNDXXLVDYLS 658
            G V       P     G       +  +  R                  ND  L +Y+ 
Sbjct: 74  -GRVAMQNIQKPEKDEWGTVLEAFEAALALERANNASLLKLHGIAEQR--NDAHLTNYIQ 130

Query: 659 GEFLDEQYXGQRDLAGXASXLKK 727
            ++L+EQ     + A   + +K+
Sbjct: 131 EKYLEEQVHSINEFARHIANIKR 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,138,368
Number of Sequences: 27780
Number of extensions: 310352
Number of successful extensions: 759
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)