Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0287
         (810 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11050.1 68416.m01333 ferritin, putative similar to ferritin ...    38   0.008

>At3g11050.1 68416.m01333 ferritin, putative similar to ferritin
           subunit cowpea2 precursor GI:2970654 (Vigna
           unguiculata); contains Pfam profile PF00210:
           Ferritin-like domain
          Length = 253

 Score = 37.9 bits (84), Expect = 0.008
 Identities = 39/158 (24%), Positives = 59/158 (37%), Gaps = 1/158 (0%)
 Frame = +2

Query: 308 QIQEEVAASIQYLAMGAYFSIDTVNRPGFAXYSSMLRLKNASTRTKLIDYLLMRGKLTGS 487
           QI  E   S  Y A+ AYF  D V   GFA + +   L+        ++Y   RG     
Sbjct: 96  QINVEYNVSYVYHALYAYFDRDNVGLKGFAKFFNDSSLEERGHAEMFMEYQNKRGGRVKL 155

Query: 488 VTDLITYGP-PPTRRGRAAHQPSSTPSSWRVXXXXXXXXXXXXXXXXFNDXXLVDYLSGE 664
            + L+         +G A H      S  ++                 ND  LVD++  E
Sbjct: 156 QSILMPVSEFDHEEKGDALHAMELALSLEKLTNEKLLKLQSVGVKN--NDVQLVDFVESE 213

Query: 665 FLDEQYXGQRDLAGXASXLKKXMDKHAASEIHLDKKLL 778
           FL EQ    + ++   + L++    H     H D+ LL
Sbjct: 214 FLGEQVEAIKKISEYVAQLRRIGKGHGV--WHFDQMLL 249


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,234,043
Number of Sequences: 28952
Number of extensions: 282431
Number of successful extensions: 656
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)