Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0286
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0244 - 27130502-27130843,27130914-27131019,27132170-27132411     30   2.0  
02_02_0544 + 11367660-11368061,11368139-11368478,11369444-113695...    29   2.7  
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703...    29   3.6  
11_05_0017 - 18416977-18417936                                         28   8.3  

>02_05_0244 - 27130502-27130843,27130914-27131019,27132170-27132411
          Length = 229

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -1

Query: 425 RPSARXFRFLPFLSRHVRRLSPSSSKSGAP 336
           R SA   R+ PFLSR  +R S  S+ SG P
Sbjct: 191 RRSATDGRYAPFLSRQPQRSSAGSTHSGKP 220


>02_02_0544 +
           11367660-11368061,11368139-11368478,11369444-11369571,
           11371249-11371404
          Length = 341

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = +3

Query: 156 DRDRVECCSSLEQESTIKERGLQRQRAKNRLSG---DGPLREPSP*SSFLGSRCRKALNR 326
           D  R      L Q S  K+R + R++AK +L     DGP +E      F+ + C   + R
Sbjct: 196 DDARKSTTPDLSQPSA-KKRPIGRKQAKEKLKNGGEDGPYKEAMKVLEFVSNMCADGIRR 254

Query: 327 NP 332
            P
Sbjct: 255 GP 256


>12_01_1024 - 10467644-10469274,10469424-10469482,10469820-10470357,
            10470975-10471666,10471912-10472062,10473797-10473864,
            10473964-10474042,10474763-10474765,10476427-10477255
          Length = 1349

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 437  YTCQRPSA-RXFRFLPFLSRHVRRLSPSSSK 348
            Y CQ P   + FRF+   SRH R+   SS K
Sbjct: 1313 YECQEPGCGQTFRFVSDFSRHKRKTGHSSDK 1343


>11_05_0017 - 18416977-18417936
          Length = 319

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 280 GDGSRSGPSPDRRFFAL*RWSP 215
           G   R GP+  RRFF   RW+P
Sbjct: 275 GVARRPGPTQGRRFFGCGRWTP 296


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,115,504
Number of Sequences: 37544
Number of extensions: 346390
Number of successful extensions: 761
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)