Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0286
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55320.1 68414.m06319 acyl-activating enzyme 18 (AAE18) nearl...    29   3.9  
At5g57380.1 68418.m07169 fibronectin type III domain-containing ...    28   5.2  
At1g64960.1 68414.m07363 expressed protein                             27   9.1  
At1g03080.1 68414.m00282 kinase interacting family protein simil...    27   9.1  

>At1g55320.1 68414.m06319 acyl-activating enzyme 18 (AAE18) nearly
           identical to acyl-activating enzyme 18 [Arabidopsis
           thaliana] GI:29893268; similar to acetyl-CoA synthetase
           [SP|P27095] from Methanothrix soehngenii; contains Pfam
           AMP-binding enzyme domain PF00501l; identical to cDNA
           acyl-activating enzyme 18 (At1g55320) GI: 29893267
          Length = 725

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 261 GHPLIDGFSPFDVGVHVL**W-TLVPNWNNTQPYLGLFF*FIRDFADFG 118
           G PL  GF  FD GV VL    +LV  W  T    GL +  I+ FA  G
Sbjct: 428 GSPLGRGFGKFDAGVTVLGTVPSLVKTWKRTNCMEGLNWTKIKFFATTG 476


>At5g57380.1 68418.m07169 fibronectin type III domain-containing
           protein / PHD finger protein-related contains Pfam
           profiles PF00041: Fibronectin type III domain, PF00628:
           PHD-finger
          Length = 600

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 156 DRDRVECCSSLEQESTIKERGLQRQRAKNRLSGDGPLREP 275
           D+D  E CS+ E ES ++E  L +++A N++ G   L  P
Sbjct: 434 DKDNTEHCSAGEVESELEEERLVKRKA-NKIDGRDLLVTP 472


>At1g64960.1 68414.m07363 expressed protein
          Length = 1168

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 303 RCRKALNRNPKGSPRF 350
           RCR  +NRNPK   RF
Sbjct: 552 RCRTLINRNPKAGARF 567


>At1g03080.1 68414.m00282 kinase interacting family protein similar to
            kinase interacting protein 1 (GI:13936326) [Petunia
            integrifolia]
          Length = 1744

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +3

Query: 144  IKRIDRDRVECCSSLEQESTIKERGLQRQRAK 239
            ++ +  + VE C +LE  ST+K+R +++ + +
Sbjct: 1340 LEGLTNELVEACKNLESRSTLKDREIEQLKGR 1371


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,638,565
Number of Sequences: 28952
Number of extensions: 273131
Number of successful extensions: 538
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)