Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0284
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    27   3.3  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    26   7.6  
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    26   7.6  

>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -2

Query: 446 ENTHFYSSHAVISNSKGTLLDYLLKISRGGTPSGQLKFVLKDTIAANGEYKVTG 285
           +   F S+H  + N    L +Y   +SR GT  G    VL   ++ NGE  VTG
Sbjct: 471 QTNEFISTHGFMENEVA-LWNYP-SVSRVGTLKGHTDRVLYLAMSPNGENIVTG 522


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 197 NPCLMQTSTYIWTLTRTKMTKSVSLR 120
           +PCL+ T  Y W+    ++ K+ +LR
Sbjct: 570 SPCLLTTGQYGWSANMERIMKAQALR 595


>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
 Frame = -1

Query: 267 RSCHFDFKTLQRKF----KADVSFLAKEPVFNANIDLYLDFDKNKNDKICFSTNTKKTDK 100
           R C   F T  +K     +  V    KE +F  N+D+ L  DK++  +   +    + D+
Sbjct: 292 RCCELAFTTKLKKLSLLERKSVRLGIKERIFRQNLDVLLQLDKSERIEKIHNAYENQFDE 351

Query: 99  LLESKNKL 76
             +   KL
Sbjct: 352 YKQIVKKL 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,440,143
Number of Sequences: 5004
Number of extensions: 72400
Number of successful extensions: 185
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)