Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0284
         (837 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,665...    30   2.6  
04_04_1159 - 31352922-31353098,31354117-31354267,31354581-313548...    29   4.6  
06_02_0306 + 14115751-14116450,14116882-14117691,14118957-14119141     29   6.1  

>04_01_0508 +
           6647812-6647820,6647864-6648226,6649351-6650673,
           6653569-6653766,6654485-6654568,6655175-6655920,
           6656480-6657341
          Length = 1194

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = +1

Query: 316 IVSFRTNFNWPLGVPPLLIFNR*SNRVPLELEITA 420
           ++S+ ++  W L +PPL I  + ++ VP++LEI A
Sbjct: 401 MLSWLSHQRWQLPLPPLFIDRQATDDVPVQLEINA 435


>04_04_1159 -
           31352922-31353098,31354117-31354267,31354581-31354812,
           31354902-31355112,31355791-31355909,31355994-31356176,
           31356283-31356481,31356636-31357015,31357127-31357191,
           31357925-31357990,31358427-31358501,31358781-31358852,
           31359318-31359386,31359476-31359547,31359658-31359729,
           31360126-31360230,31360282-31360353,31361053-31361230,
           31361707-31361791
          Length = 860

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 631 IFLWLKPRHRICRHFLNFYTVISRVSXFEF-*LQVRTQRFSGS 756
           IFLW K R ++       Y+++ R + F +  L+  T+ FS S
Sbjct: 549 IFLWRKKRRKLSLEQQELYSIVGRPNIFSYGELRSATENFSSS 591


>06_02_0306 + 14115751-14116450,14116882-14117691,14118957-14119141
          Length = 564

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 313 AIVSFRTNFNWPLGVPPLLIFNR*SNRVPLELE 411
           A+ ++RT +  P+G+ P  I    S R+P+ELE
Sbjct: 96  ALWAYRTTYKTPIGMSPYQIVYGKSCRLPVELE 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,013,516
Number of Sequences: 37544
Number of extensions: 425597
Number of successful extensions: 940
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)