Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0284
         (837 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92973-8|CAO82049.1|  517|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z81554-6|CAO82038.1|  517|Caenorhabditis elegans Hypothetical pr...    30   2.3  
U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z49128-8|CAA88960.2|  989|Caenorhabditis elegans Hypothetical pr...    28   9.5  
U13876-5|AAA21176.2|  449|Caenorhabditis elegans Mammalian bysti...    28   9.5  
AL021171-6|CAA15960.2|  989|Caenorhabditis elegans Hypothetical ...    28   9.5  

>Z92973-8|CAO82049.1|  517|Caenorhabditis elegans Hypothetical
           protein Y6G8.8 protein.
          Length = 517

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 175 DVCIKHGFLRQKAYISFKFAL*RFKIEMTTPLPFPSFPVTL 297
           D+C++HG+   +++ SF F      +++   L  PS  + L
Sbjct: 180 DICMQHGYFGSESFSSFTFTKVSLDVKLNEKLKLPSENIKL 220


>Z81554-6|CAO82038.1|  517|Caenorhabditis elegans Hypothetical
           protein Y6G8.8 protein.
          Length = 517

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 175 DVCIKHGFLRQKAYISFKFAL*RFKIEMTTPLPFPSFPVTL 297
           D+C++HG+   +++ SF F      +++   L  PS  + L
Sbjct: 180 DICMQHGYFGSESFSSFTFTKVSLDVKLNEKLKLPSENIKL 220


>U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical
           protein F59A6.3 protein.
          Length = 786

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
 Frame = -2

Query: 506 TSKSAASGKSDDIKFDVGVVENTHFYSS-HAVISNSKGTLLDYLLKISR--GGTPSGQLK 336
           ++KS  SG S     ++  V      S+  A IS++ G  + +  K S   GGT S    
Sbjct: 595 STKSTTSGPSTTSGKNISTVSGKLTGSTTSATISSAFGGNVTFTSKPSNSSGGTTSSGKN 654

Query: 335 FVLKDTIAANGEYKVTGNDGKGN 267
           F    T AANG  +   N   G+
Sbjct: 655 FSQNTTSAANGTTQAVNNGKSGS 677


>Z49128-8|CAA88960.2|  989|Caenorhabditis elegans Hypothetical
           protein M03C11.8 protein.
          Length = 989

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = -2

Query: 581 YGRYELSGVLLHKNKPNDVNLGAIVTSKSAASGKSDDIKFDVGVVENTHFYSSHAVISNS 402
           YG  +    L H+ K    ++  I+T+ +  + KSDD KF      N   Y    ++ N 
Sbjct: 474 YGSQDERKHLRHRVKKQKDHIDVILTTYNMVTSKSDDKKFFKNFSLNYVIYDEGHMLKNC 533

Query: 401 KGTLLDYLLKI 369
                  L+K+
Sbjct: 534 DSERYRGLMKV 544


>U13876-5|AAA21176.2|  449|Caenorhabditis elegans Mammalian bystin
           (adhesion protein)related protein 1 protein.
          Length = 449

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/71 (25%), Positives = 36/71 (50%)
 Frame = -2

Query: 674 KCRQILCRGFSQRNILNADKSNLENYVDIKGYGRYELSGVLLHKNKPNDVNLGAIVTSKS 495
           +C   LC+ +  +N LNA++     Y  I+ +G Y +S  +  + +  +   G ++TS  
Sbjct: 382 QCLLALCQRY--KNDLNAEQK-AAIYELIRFHGHYLISPEIRRELESKETEDGHVITSVV 438

Query: 494 AASGKSDDIKF 462
               K+D ++F
Sbjct: 439 VEGRKTDSMEF 449


>AL021171-6|CAA15960.2|  989|Caenorhabditis elegans Hypothetical
           protein M03C11.8 protein.
          Length = 989

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/71 (25%), Positives = 30/71 (42%)
 Frame = -2

Query: 581 YGRYELSGVLLHKNKPNDVNLGAIVTSKSAASGKSDDIKFDVGVVENTHFYSSHAVISNS 402
           YG  +    L H+ K    ++  I+T+ +  + KSDD KF      N   Y    ++ N 
Sbjct: 474 YGSQDERKHLRHRVKKQKDHIDVILTTYNMVTSKSDDKKFFKNFSLNYVIYDEGHMLKNC 533

Query: 401 KGTLLDYLLKI 369
                  L+K+
Sbjct: 534 DSERYRGLMKV 544


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,703,460
Number of Sequences: 27780
Number of extensions: 396069
Number of successful extensions: 945
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)