Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0284
         (837 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     25   0.86 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.1  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -2

Query: 524 NLGAIVTSKSAASGKSDDIKFDVGVVENTHFYSSHAVISNSKGTLLDY 381
           N G+I  SK     K DD+   +G  E +H+   +  + NS   L +Y
Sbjct: 253 NKGSI--SKLQFHNKDDDLILTLGKKEFSHYEHQNVFVKNSGQWLREY 298


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 6/20 (30%), Positives = 14/20 (70%)
 Frame = -1

Query: 177  IDLYLDFDKNKNDKICFSTN 118
            +D+Y++ +  + D + FST+
Sbjct: 1119 VDMYMNLEGEQKDPVIFSTS 1138


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -1

Query: 186  NANIDLYLDFDKNKNDKICFSTNTKKTDKLLESKNKLEYGGKNFE 52
            +++   Y  F    ++  C + + K T+ LLE   K +YG +  E
Sbjct: 953  SSSSSFYSSFLYKSSESSC-NPDQKPTEYLLEDSMKQQYGKRRKE 996


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 119  IPRKPINYWNP 87
            +P  P N+WNP
Sbjct: 1156 LPFTPFNFWNP 1166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,073
Number of Sequences: 438
Number of extensions: 5175
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)