Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0284
         (837 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79110.2 68414.m09225 expressed protein                             33   0.31 
At1g79110.1 68414.m09224 expressed protein                             33   0.31 
At3g20710.1 68416.m02621 F-box protein-related contains weak hit...    29   2.9  
At4g32920.1 68417.m04685 glycine-rich protein                          29   5.1  
At1g02530.1 68414.m00204 multidrug resistance P-glycoprotein, pu...    29   5.1  
At1g02520.1 68414.m00203 multidrug resistance P-glycoprotein, pu...    29   5.1  
At1g69660.1 68414.m08017 meprin and TRAF homology domain-contain...    28   6.7  
At1g50820.1 68414.m05715 hypothetical protein                          28   8.8  

>At1g79110.2 68414.m09225 expressed protein
          Length = 355

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -3

Query: 784 SDCGKXGDKSSQRSAAFELEARTQXEKPGRLQCKN*GNVDKFCVEVL 644
           S CG  G+++ +R    E EA+ + E+  R  C+N G  ++ CV +L
Sbjct: 275 SSCGGGGEETVRRRVGLEREAQDKAERRRRRMCRNCGE-EESCVLLL 320


>At1g79110.1 68414.m09224 expressed protein
          Length = 358

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -3

Query: 784 SDCGKXGDKSSQRSAAFELEARTQXEKPGRLQCKN*GNVDKFCVEVL 644
           S CG  G+++ +R    E EA+ + E+  R  C+N G  ++ CV +L
Sbjct: 278 SSCGGGGEETVRRRVGLEREAQDKAERRRRRMCRNCGE-EESCVLLL 323


>At3g20710.1 68416.m02621 F-box protein-related contains weak hit to
           TIGRFAM TIGR01640 : F-box protein interaction domain;
           contains weak hit to Pfam PF00646: F-box domain
          Length = 362

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/62 (27%), Positives = 33/62 (53%)
 Frame = -2

Query: 653 RGFSQRNILNADKSNLENYVDIKGYGRYELSGVLLHKNKPNDVNLGAIVTSKSAASGKSD 474
           R F+ +NI  A  S  + ++ I  +  + + GV LH+++ N  +L   + +K  +  K D
Sbjct: 40  RSFANKNIDKAAVSGEKEFLMITQFNVFWV-GVNLHRSQNNSFDLSIQLKAKIVSRDKKD 98

Query: 473 DI 468
           D+
Sbjct: 99  DL 100


>At4g32920.1 68417.m04685 glycine-rich protein 
          Length = 1432

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 365 RGGTPSGQLKFVLKDTIAANGEYKVTGNDGKGNG 264
           +GG  SG   FV+   +A NG    +G DG   G
Sbjct: 255 KGGGGSGGSIFVMAHKMAGNGRLSASGGDGYAGG 288


>At1g02530.1 68414.m00204 multidrug resistance P-glycoprotein,
            putative similar to multidrug-resistant protein CjMDR1
            GI:14715462 from [Coptis japonica]
          Length = 1273

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = -2

Query: 416  VISNSKGTLLDYLLKISRGGTPSGQLKFVLKDTIAANGEYKVTGNDGKGNGVVISILKRY 237
            V+ N KG +    L  +    P  Q+   L  TI A     + G  G G   VIS+L+R+
Sbjct: 1019 VLENVKGDIELRHLSFTYPARPGIQIFRDLCLTIRAGKTVALVGESGSGKSTVISLLQRF 1078


>At1g02520.1 68414.m00203 multidrug resistance P-glycoprotein,
            putative similar to multidrug-resistant protein CjMDR1
            GI:14715462 from [Coptis japonica]
          Length = 1278

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = -2

Query: 416  VISNSKGTLLDYLLKISRGGTPSGQLKFVLKDTIAANGEYKVTGNDGKGNGVVISILKRY 237
            V+ N KG +    L  +    P  Q+   L  TI A     + G  G G   VIS+L+R+
Sbjct: 1024 VLENVKGDIELRHLSFTYPARPDIQIFRDLCLTIRAGKTVALVGESGSGKSTVISLLQRF 1083


>At1g69660.1 68414.m08017 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 231

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
 Frame = -1

Query: 255 FDFKTLQRKFKADVSFLAKEPVFNANIDLYLDFDKNKNDKICFSTNTKKTDKLLE---SK 85
           F F+  + +F  DV  L   P+ N  I   L FD+ K     FS N K   +L E   + 
Sbjct: 61  FIFEGGECEFGVDV--LVAPPLTNWEI---LSFDE-KLSPPKFSWNLKNFSELKEDVYTS 114

Query: 84  NKLEYGGKNFELNIHLEGNFELTG 13
           NK   GGK + L ++ +GN    G
Sbjct: 115 NKYPMGGKEWVLKLYPKGNSRADG 138


>At1g50820.1 68414.m05715 hypothetical protein
          Length = 528

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 162 DFDKNKNDKICFSTNTKKTDKLLESKNKLEYGG 64
           ++ K KNDK+C  T     ++ + S ++LE+ G
Sbjct: 157 EWKKIKNDKVCLVTKLAWMERFMNSGDELEHVG 189


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,564,008
Number of Sequences: 28952
Number of extensions: 363653
Number of successful extensions: 855
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)