Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0283
(710 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 140 1e-33
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 126 2e-29
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 113 1e-25
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 1e-20
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 49 4e-06
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 36 0.032
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.043
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 36 0.043
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 33 0.23
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 32 0.40
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 31 0.92
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 2.1
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 140 bits (339), Expect = 1e-33
Identities = 61/127 (48%), Positives = 90/127 (70%)
Frame = +3
Query: 129 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERELGITIDIALWKFETSKYYVT 308
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER+ G T+++ F+T + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 309 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 488
++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQTREHA+LA T GVK L
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHL 285
Query: 489 IVGVNKM 509
++ VNKM
Sbjct: 286 VILVNKM 292
Score = 34.3 bits (75), Expect = 0.099
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +2
Query: 509 DSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 598
D ++E R+EEIK +++ ++KK+G+NP
Sbjct: 293 DDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 126 bits (303), Expect = 2e-29
Identities = 57/60 (95%), Positives = 58/60 (96%)
Frame = +3
Query: 189 MGKGSFKYAWVLDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 368
MGKGSFKYAWVLDKLKAERE GITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 113 bits (273), Expect = 1e-25
Identities = 53/95 (55%), Positives = 69/95 (72%), Gaps = 2/95 (2%)
Frame = +3
Query: 261 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 440
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 441 TREHALLAFTLGVKQLIVGVNK--MIPLNHHTVSP 539
TREHA+L +LGV QLIV +NK M+ L +H P
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 191
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 48.8 bits (111), Expect = 4e-06
Identities = 28/110 (25%), Positives = 51/110 (46%)
Frame = +3
Query: 78 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERELGI 257
+I H D+GK+T T L+ G I +EA + K D ++ ER+ GI
Sbjct: 15 IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65
Query: 258 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 407
++ ++ F + I+D PGH+DF ++ + D ++++ G
Sbjct: 66 SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 35.9 bits (79), Expect = 0.032
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
Frame = +3
Query: 45 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKFEKEAQEMGKGSFKYAW 218
M K+ N+ VI HVD GKST T L+ K G I K +F ++
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITIKS 71
Query: 219 VLDKLKAERELGITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 395
L E I K + + + +ID+PGH DF + D A+++V
Sbjct: 72 TAISLYYELPESDFEYITQPKDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVD 131
Query: 396 AGTG 407
+G
Sbjct: 132 CVSG 135
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 35.5 bits (78), Expect = 0.043
Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
Frame = +3
Query: 60 THINIVVIGHVDSGKSTTTGHLIYK--CGGIDKRTIEKFE--KEAQEMGKGSFKYAWVLD 227
T I + V+G+V+SGKST G L Y G + + F E Q S + +
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLFRHLHEIQSGRTSSISHEILGF 170
Query: 228 KLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS--QADCAVLIVAAG 401
E A E S +T ID GH ++K I G + D A+L++A
Sbjct: 171 SCTGEVVNYSDGRSAEDVCEQSSKLITFIDLAGHHKYMKTTIFGLTGHSPDYAMLVIAGN 230
Query: 402 TG 407
G
Sbjct: 231 AG 232
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 35.5 bits (78), Expect = 0.043
Identities = 35/135 (25%), Positives = 58/135 (42%)
Frame = +3
Query: 42 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 221
K+ + + NI V+GHVDSGK++ L + F+K Q +G
Sbjct: 28 KIKERILNFNIGVLGHVDSGKTSLAKAL------STTASTASFDKNPQSQERGI-----T 76
Query: 222 LDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 401
LD + ++ + + E +T++D PGH IK +I G A +I G
Sbjct: 77 LDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG------AQIIGECG 130
Query: 402 TGEFEAGISKNGQTR 446
T E G ++G+ +
Sbjct: 131 T--IEGGFGQSGKVK 143
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 33.5 bits (73), Expect = 0.17
Identities = 24/65 (36%), Positives = 30/65 (46%)
Frame = +3
Query: 69 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 248
N ++ HVD GKST L+ G I K + K VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986
Query: 249 LGITI 263
GIT+
Sbjct: 1987 RGITV 1991
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 33.1 bits (72), Expect = 0.23
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Frame = +3
Query: 66 INIVVIGHVDSGKST-----TTGHLIYKCGGIDKRTI-EKFEKEA---QEMGKGSFKYAW 218
+ + V+G+VD+GKST T G L G +R K E E+ +G +
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTHGELDNGRGTARQRLFRHKHEMESGRTSSVGNDILGFDN 289
Query: 219 VLDKLKAERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITG 359
+ + G +D A E+SK +T ID GH ++K I G
Sbjct: 290 TGQVVNKAEQHGANVDWAKICKESSK-VITFIDLAGHERYLKTTIFG 335
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 32.7 bits (71), Expect = 0.30
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 303 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 407
+T ID PGH F G + D VL+VAA G
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 32.3 bits (70), Expect = 0.40
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +3
Query: 252 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 398
GIT I + + + +D PGH F G D +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 31.1 bits (67), Expect = 0.92
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +3
Query: 312 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 491
+D PGH + M+ G + D A+L++A QT EH + +K ++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122
Query: 492 VGVNKM 509
+ NK+
Sbjct: 123 ILQNKI 128
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 309 IIDAPGHRDFIKNMITGTSQADCAVLIV 392
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +2
Query: 512 STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 652
ST S+ FE KK +S+ K +P+ + FVP WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113
>SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 951
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 467 HPRCQTAHRRSXQNDSTEPPYSEPRFEEIKKEVSSYIKKIGYN 595
H + + RR +N + + P+FE++K + +S KKI N
Sbjct: 109 HETTEPSVRRCQRNSVRDIDAAWPKFEKLKSQFNSNSKKISMN 151
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,979,672
Number of Sequences: 59808
Number of extensions: 450607
Number of successful extensions: 1308
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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