Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0281
         (944 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   5.1  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    27   5.1  

>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = -3

Query: 522 LHTGRAKSMPKIYYYNTFTYRRPT----RVLYHPKGRLVLHPTKVSISNNTSARTSQKAV 355
           +H GR K  P   YY+  T  + T    R +  PK      P+K S + ++S   S +  
Sbjct: 558 VHDGRLKKYP---YYHVKTPEKGTTVVSRTVTSPKSGAYASPSKASYNQDSSPNASLEQC 614

Query: 354 CVQHT 340
            VQ +
Sbjct: 615 FVQRS 619


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 387 CYLSIPWSGATLIDL*DGIIRGSVSCK*RYY-NSIFLAL 500
           C L+ P+ G + ++L   I +G++SC   +Y + +FL +
Sbjct: 220 CMLTHPFEGRSYLELQRNICQGNLSCWDHHYSDDVFLLI 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,335,900
Number of Sequences: 5004
Number of extensions: 60008
Number of successful extensions: 116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)