Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0280
         (800 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     25   0.70 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    25   0.70 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           25   0.70 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.1  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    22   5.0  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   6.5  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +2

Query: 65  PMCDETTAWPPVTPRELQYQDI--ITPNL 145
           PMC+     PPVT      Q++  ITPN+
Sbjct: 111 PMCESLNTQPPVTSSSNILQNLADITPNV 139


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +2

Query: 65  PMCDETTAWPPVTPRELQYQDI--ITPNL 145
           PMC+     PPVT      Q++  ITPN+
Sbjct: 111 PMCESLNTQPPVTSSSNILQNLADITPNV 139


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +2

Query: 65  PMCDETTAWPPVTPRELQYQDI--ITPNL 145
           PMC+     PPVT      Q++  ITPN+
Sbjct: 111 PMCESLNTQPPVTSSSNILQNLADITPNV 139


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 398 LFYYPCRQTSIRP 360
           LFYYP RQT   P
Sbjct: 105 LFYYPSRQTLYTP 117


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 315 PESQPNRCPPL 283
           PE  P RCPP+
Sbjct: 26  PEPYPPRCPPI 36


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 324 TSMSNSNYSPSGGP 365
           T+ S SNYSPS  P
Sbjct: 209 TASSASNYSPSQSP 222


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,592
Number of Sequences: 336
Number of extensions: 4366
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)