Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0280
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.77 
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch...    29   1.0  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    27   2.3  
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch...    27   4.1  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    25   9.5  
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo...    25   9.5  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 71   CDETTAWPPVTPRELQYQDIITP 139
            C+  T WPP  P E  +  ++TP
Sbjct: 2045 CEHNTVWPPWVPFETTFDFVLTP 2067


>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +2

Query: 77  ETTAWPPVTPRELQYQDIITPNLCHQTSLTKEQLEMKNFFDKIHNGGESRLK 232
           +T+   P +P +L+ +   +  +CH  S  ++ L + N    IHNG  S L+
Sbjct: 6   DTSGSVPGSPIDLEPE---SETICHWQSCEQDLLTLDNLVHHIHNGTTSNLR 54


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -3

Query: 246 KI*VYXXXXXXXLWILSKKFFISSCSLVRLVWWH-KFGVIMSWYCSSRGV 100
           ++ VY        W ++ ++     SL+R+ W H  FG +++     RGV
Sbjct: 37  RVKVYDFNDDTETWAITSEWRAGDASLMRVAWAHPSFGQVLAVCSLDRGV 86


>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 272

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 312 ESQPNRCPPLSILPTYLSPSTLK 244
           E  PN CP +S+L     P TLK
Sbjct: 161 EELPNFCPDMSVLDNRTHPRTLK 183


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +2

Query: 521 NCFVSNPVRFSTFIIN--GFILSDNWKISCDPFKLDYLHTDGYMSTFNLLWIINLGLYAS 694
           N F ++   ++ F+ +  G +++D + I     K+D L+T      +   + INL  +AS
Sbjct: 403 NSFANSLSAYAVFLSSFAGILIADYFVIRKGYLKVDALYTINPNEPYWFTYGINLRAFAS 462

Query: 695 WRC 703
           + C
Sbjct: 463 YIC 465


>SPAC23G3.05c |||regulator of G-protein signaling
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 343

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +2

Query: 578 LSDNWKISCDPFKLDYLHTDGYMSTFNLLWIINLGLYASW--RCRVW 712
           L+  +K + +P         GY+STF   W+   G++  +  R RVW
Sbjct: 219 LNHKFKHNLNPLTCTGRFIIGYVSTFAAYWLGFCGIFLDYSRRKRVW 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,354,151
Number of Sequences: 5004
Number of extensions: 72360
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)