Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0280
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050     31   1.1  
05_03_0682 - 16916437-16916686,16916761-16916822,16917082-169171...    29   3.3  
07_03_0471 + 18501496-18502104,18503009-18503260,18503367-185035...    29   5.7  
02_05_0966 - 33143383-33143464,33143946-33144087,33144136-331441...    29   5.7  
10_06_0035 - 9896289-9896390,9897394-9897503,9897587-9897715,989...    28   7.5  
03_02_0932 + 12495700-12495738,12495859-12496093,12496178-124964...    28   9.9  

>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
          Length = 478

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +3

Query: 264 DR*VEYSMVGSGLAVTLALLTSMSNSNYSPSGGPYARL 377
           DR +++   GS LA +L LL  M  +   PSG  YARL
Sbjct: 56  DRGIQHH-AGSDLASSLRLLADMQAAGLRPSGAAYARL 92


>05_03_0682 - 16916437-16916686,16916761-16916822,16917082-16917147,
            16917606-16917737,16917925-16918026,16918146-16918343,
            16918409-16918555,16918804-16918914,16919661-16920194,
            16920269-16920425,16920511-16920660,16920744-16920883,
            16921668-16921784,16922759-16922932,16923020-16923187,
            16923323-16923464,16923610-16923728,16924997-16925098,
            16925618-16925701,16926843-16927142
          Length = 1084

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 20/87 (22%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
 Frame = -2

Query: 442  WIHSTPRTTKSRIVIYFITLVGRRAY-GPPDGE*LLLLMD--VSNARVTAKPLPTIEYST 272
            ++HS       RI +     +  R+  G  D E  +++ D  V ++++  KP    ++S 
Sbjct: 883  YVHSKLMIIDDRITLIGSANINDRSLLGSRDSEIAVVIEDKEVVSSKMNGKPWEAGKFSL 942

Query: 271  YLSITIYPKNLSLLKSAFTSIMDLIEE 191
             L ++++ ++L L +   + IMD I++
Sbjct: 943  SLRLSLWAEHLGLHRGEVSHIMDPIDD 969


>07_03_0471 +
           18501496-18502104,18503009-18503260,18503367-18503537,
           18503693-18503743,18503868-18503960,18504125-18504220,
           18504318-18504368,18504452-18504570,18504909-18505017,
           18505391-18505513,18505590-18505661,18505963-18506034,
           18506125-18506191,18506260-18506402,18506494-18506565,
           18506632-18506760,18507317-18507472,18507579-18507692,
           18507791-18507889,18507974-18508051,18508402-18508536,
           18509081-18509155,18509247-18509361,18509458-18509828,
           18509903-18509965,18510049-18510120,18510285-18510413,
           18510512-18510628,18510902-18511018
          Length = 1289

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 123 WYCSSRGVTGGHAVVSSHIGALHR 52
           W+C+SRG T G  +V+  + A H+
Sbjct: 186 WFCNSRGNTSGSHIVNHLVRAKHK 209


>02_05_0966 -
           33143383-33143464,33143946-33144087,33144136-33144163,
           33144453-33144631,33144776-33144866,33145643-33145951
          Length = 276

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +2

Query: 71  CDETTAWPPVTPRELQYQDIITPNLCHQTSLTKEQLEMKNFFDKIHN 211
           CDE  A PP  P E  Y+   T  LC    L K ++    F +K+ N
Sbjct: 83  CDEEGAPPPSPPSEADYE---TDELC---DLLKSRVASPEFLEKLDN 123


>10_06_0035 -
           9896289-9896390,9897394-9897503,9897587-9897715,
           9898734-9898800,9898888-9898970,9899878-9899959,
           9900049-9900125,9900206-9900289,9900368-9900437,
           9900580-9900668,9900921-9901613,9902833-9903142
          Length = 631

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +2

Query: 440 PTHLSFDCRQRYSMSVACKHQCKDCGFNCFVSNPVRFSTFIINGFILSDNWKISC 604
           P ++++ C Q + +S  CK QC + G  C       FST      ++ +N +  C
Sbjct: 236 PHYITWYCPQAFVVSKQCKSQCINHGRYCAPDPEQDFSTGYEGKDVVVENLRQLC 290


>03_02_0932 +
           12495700-12495738,12495859-12496093,12496178-12496423,
           12496519-12496572,12497329-12497589,12497750-12497802,
           12497893-12498016,12498147-12498401,12498798-12499888,
           12500001-12500007,12500316-12500445,12500617-12500731,
           12500783-12500853,12501246-12501354,12501550-12501738,
           12502519-12502644,12503048-12503563
          Length = 1206

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 318 MPESQPNRCPPLSILPTYLS 259
           +P +    CPPLS+ P YLS
Sbjct: 811 IPPAMATACPPLSLQPAYLS 830


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,654,888
Number of Sequences: 37544
Number of extensions: 468259
Number of successful extensions: 1044
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)