Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0280
         (800 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30325| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_11639| Best HMM Match : DUF1225 (HMM E-Value=0.71)                  30   2.5  
SB_31410| Best HMM Match : PDZ (HMM E-Value=1.1e-15)                   29   3.3  
SB_27560| Best HMM Match : DUF541 (HMM E-Value=5.2e-14)                29   5.8  

>SB_30325| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +2

Query: 2   ADDEMKYWMTTFVTNFMRCSAPMCDETTAWPPVTPRELQY 121
           AD E      TF+ NF++   P       WP  TP   QY
Sbjct: 472 ADREFAKRFRTFIANFVKTGDPNGATVPTWPQFTPVHQQY 511


>SB_11639| Best HMM Match : DUF1225 (HMM E-Value=0.71)
          Length = 843

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 375 DEHTAHLMVSSYCCSWTSVMPESQPNRCPPLS 280
           +E TA   V      +TSV P S PN+ PP+S
Sbjct: 504 EESTASTKVEELPSWYTSVTPASLPNKSPPIS 535


>SB_31410| Best HMM Match : PDZ (HMM E-Value=1.1e-15)
          Length = 556

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 209 NGGESRLK*TQIFRVDGDR*VGRILNGGQRFGCDSGITDV 328
           NG ES  K   + + D D+ +G  + GG+  GC   I+ V
Sbjct: 121 NGDESMFKVVTLVKTDPDQVLGFSIRGGREHGCGVYISQV 160


>SB_27560| Best HMM Match : DUF541 (HMM E-Value=5.2e-14)
          Length = 252

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +2

Query: 92  PPVTPRELQYQDII-TPNLCHQTSLTKEQLEMKNFFDKI 205
           PP+T RE  Y++I+ TPN   +TS ++++    +F DKI
Sbjct: 187 PPITIREESYEEIMGTPNEHPETSESQKK-HAHSFHDKI 224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,197,969
Number of Sequences: 59808
Number of extensions: 538551
Number of successful extensions: 1252
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)