Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0280
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U28993-6|AAK31498.2|  639|Caenorhabditis elegans Hypothetical pr...    28   8.9  
AF316599-1|AAG38591.1|  639|Caenorhabditis elegans paracaspase p...    28   8.9  

>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical protein
            E01G6.1 protein.
          Length = 1391

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +2

Query: 491  CKHQCKDC--GFNCFVSNPVRFSTFIINGFILSDNWKISCDPFKLDYLHTDGYMSTFNL 661
            C     DC  G+ CF S+         +G  LSD ++  C P ++ Y+  DG+  T ++
Sbjct: 904  CSPMKADCPAGYTCFESDQSSQFICCTHGD-LSDRFQGYCPPRQIPYISRDGFPPTCHM 961


>U28993-6|AAK31498.2|  639|Caenorhabditis elegans Hypothetical
           protein F22D3.6 protein.
          Length = 639

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 8/37 (21%), Positives = 21/37 (56%)
 Frame = +1

Query: 442 NSSII*LPTKIFYVRSMQASMQGLWLQLFRFESSQVF 552
           N+++  LP +IF + S +     +W+++  F+   ++
Sbjct: 2   NTNLAELPVRIFKILSEELQKDNIWIKIVEFDEDPIY 38


>AF316599-1|AAG38591.1|  639|Caenorhabditis elegans paracaspase
           protein.
          Length = 639

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 8/37 (21%), Positives = 21/37 (56%)
 Frame = +1

Query: 442 NSSII*LPTKIFYVRSMQASMQGLWLQLFRFESSQVF 552
           N+++  LP +IF + S +     +W+++  F+   ++
Sbjct: 2   NTNLAELPVRIFKILSEELQKDNIWIKIVEFDEDPIY 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,659,201
Number of Sequences: 27780
Number of extensions: 412330
Number of successful extensions: 995
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)