Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0280
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   3.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.4  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           22   7.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.6  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/79 (16%), Positives = 32/79 (40%)
 Frame = +2

Query: 431 RMYPTHLSFDCRQRYSMSVACKHQCKDCGFNCFVSNPVRFSTFIINGFILSDNWKISCDP 610
           R+YP   S      + + +       +C       + +     ++  +  +D+W+I+ + 
Sbjct: 157 RIYPLKSSDQTSDSFFVDLVIDVDPNNCDNTYAYISDLSGYALVVYSWAKNDSWRITHNF 216

Query: 611 FKLDYLHTDGYMSTFNLLW 667
           F  D  + +  ++ FN  W
Sbjct: 217 FYFDPRYGNYNINGFNFQW 235


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +2

Query: 77  ETTAWPPVTPRELQ-YQDIITPNLCHQTSLTKEQLEMKNFFDKIHNGG 217
           E T + P  P   +  ++ +TP   H  + +KE L   +  D    GG
Sbjct: 385 EKTCYYPYHPSTQEDSEEHLTPKRFHSRAASKEDLSPSSLADGARFGG 432


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +2

Query: 77  ETTAWPPVTPRELQ-YQDIITPNLCHQTSLTKEQLEMKNFFDKIHNGG 217
           E T + P  P   +  ++ +TP   H  + +KE L   +  D    GG
Sbjct: 385 EKTCYYPYHPSTQEDSEEHLTPKRFHSRAASKEDLSPSSLADGARFGG 432


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 436 HSTPRTTKSRIVIYFITLVGRRAYG 362
           H+  +T  +  V+Y + + GR  YG
Sbjct: 76  HTKRKTVTAMDVVYALKIQGRTLYG 100


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = -1

Query: 530 RNS*SHNPCIDACMLRT*NIFVGSQMIDELDTFYPANNEKS 408
           +N+  HN  +  C +R  N+      +DE++ FY    +++
Sbjct: 549 KNAVRHNLSLHKCFMRVENVKGAVWTVDEVE-FYKRRPQRA 588


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,290
Number of Sequences: 438
Number of extensions: 5044
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)