Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0280
         (800 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45290.1 68416.m04890 seven transmembrane MLO family protein ...    29   2.7  
At5g47010.1 68418.m05794 RNA helicase, putative similar to type ...    29   4.7  
At4g23250.1 68417.m03352 protein kinase family protein contains ...    28   6.3  
At2g43745.1 68415.m05438 expressed protein weak similarity to RT...    28   6.3  
At4g28470.1 68417.m04073 26S proteasome regulatory subunit, puta...    28   8.3  

>At3g45290.1 68416.m04890 seven transmembrane MLO family protein /
           MLO-like protein 3 (MLO3) membrane protein Mlo3
           [Arabidopsis thaliana] gi|14091576|gb|AAK53796; similar
           to MLO protein SWISS-PROT:P93766, NCBI_gi:1877221
           [Hordeum vulgare][Barley]
          Length = 508

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = +3

Query: 429 VECI-QLIYHLTADKDILCP*HASINARIVASTVSFRIQSGFQPS*LMDLFYLTIGKSAV 605
           ++C  +  Y+  A  D L   H  I A  V+S  +F  Q+  Q S L + F   +G S +
Sbjct: 226 IKCFFRQFYNSVAKVDYLTLRHGFIFAH-VSSNNAFNFQNYIQRS-LHEDFKTVVGISPL 283

Query: 606 TLLNLITYILMDTCRLLIYF 665
             L ++ ++L+D     +YF
Sbjct: 284 MWLTVVIFMLLDVSGWRVYF 303


>At5g47010.1 68418.m05794 RNA helicase, putative similar to type 1
           RNA helicase pNORF1 [Homo sapiens] GI:1885356
          Length = 1254

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 123 WYCSSRGVTGGHAVVSSHIGALHR 52
           W+C+SRG T G  +V+  + A H+
Sbjct: 162 WFCNSRGNTSGSHIVNHLVRAKHK 185


>At4g23250.1 68417.m03352 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 998

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 92  PPVTPRELQYQDIITPNLCHQTSLTKEQLEMKNFF 196
           PP  PR L    + TP++ +QT++TK+    K+FF
Sbjct: 250 PPPPPRPLSPPPLKTPSVTNQTNITKK--NGKSFF 282


>At2g43745.1 68415.m05438 expressed protein weak similarity to RTM1
           (GI:6503088) [Arabidopsis thaliana]
          Length = 158

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 584 DNWKISCDPFKLDYLHTDGYMSTFNLLWIINLGLY 688
           ++WKI  DP   D     G+  + NL  + ++G+Y
Sbjct: 108 NHWKIDIDPAICDEREFGGFFGSNNLYHLTSIGMY 142


>At4g28470.1 68417.m04073 26S proteasome regulatory subunit,
           putative contains Pfam domain PF01851:
           Proteasome/cyclosome repeat
          Length = 1103

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 283 EYSTYLSITIYPKNLSLLKSAFTSIMDLIEE 191
           EY   L I ++  N+  +K  FTS  DL+++
Sbjct: 282 EYPNALQIALFLDNMQYVKQVFTSCTDLVKK 312


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,477,128
Number of Sequences: 28952
Number of extensions: 378440
Number of successful extensions: 880
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)