Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0279
         (680 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    29   0.047
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   7.1  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 28.7 bits (61), Expect = 0.047
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -1

Query: 320 RFRLRKRVANRASDNARAATAVKE 249
           RFRLR R  +R +DN+ +AT+ K+
Sbjct: 60  RFRLRSRPGHRKTDNSLSATSKKD 83


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/40 (22%), Positives = 18/40 (45%)
 Frame = +3

Query: 180 TPFSRNKKEYEIVKVTALFESNKFFNCRGRTRVVTRPVCD 299
           +PF  + +  E++K  +       ++ RGR   +   V D
Sbjct: 131 SPFRIDNESQELLKYPSFARGRSLYDSRGRHSEIVETVYD 170


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 259 AVAARAL-SLALFATRLRNRNRSSNHILISIPGARPDVLSVDS 384
           AVAA A  S  L  T     NR+S   LIS   + P V  VD+
Sbjct: 153 AVAAAAQQSHRLMMTSPSGFNRASVSPLISSSSSPPGVFPVDA 195


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,777
Number of Sequences: 336
Number of extensions: 2996
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)