Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0279
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch...    31   0.15 
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    26   5.8  
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    25   7.7  

>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
           dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 511 NEPVLGYRAGSRERQDLIEELKRT-ASVIEDVPIVIAGKNITEGEPRYQVMPHDHSK 678
           NEP   Y   S +R+ +++  K   A +   +P++I GK +       Q  P +H K
Sbjct: 14  NEPPKHYGPNSADREGIVKAYKELEAELPVTIPVIIDGKEVETNTIGEQRCPFEHKK 70


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -3

Query: 150 MLLILKMRCIFNFSVSIENSFK*VYKTRYYCKMFANFP 37
           M++ + + CIF+ +V+     + V   R++C  F + P
Sbjct: 143 MIIAVFIFCIFHIAVATAKDIQTVMICRFFCGFFGSSP 180


>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +1

Query: 547 ERQDL--IEELKRTASVIEDVPIVIAGKNITEGE 642
           +RQD+  + ELKR  S++ED+ I  AG +   GE
Sbjct: 147 QRQDVFTVHELKRIESILEDL-INAAGASHKHGE 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,679,694
Number of Sequences: 5004
Number of extensions: 51300
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)