Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0279
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0985 - 22042801-22042963,22043019-22043138,22043261-220435...    29   4.5  
11_06_0315 + 22318155-22318210,22319743-22319769,22319868-223199...    28   6.0  
03_02_0232 + 6614784-6614882,6616145-6616477,6616708-6616967,661...    28   7.9  

>10_08_0985 -
           22042801-22042963,22043019-22043138,22043261-22043562,
           22044055-22044351,22044448-22044556,22044826-22045358,
           22045446-22045644,22045741-22045865,22045937-22046020,
           22046093-22046221,22046337-22046465,22046593-22046739,
           22047106-22047346,22047859-22047980
          Length = 899

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +1

Query: 283 LALFATRLRNRNRSSNHILISIPGARPDVLSVDSLFSVDQGQRYAYNLGE 432
           +ALF   L   N+ +   L+ IPG   + L   +LFSV   + Y  N GE
Sbjct: 377 IALFVPELGGGNQPARVSLVQIPG--KEELRQKNLFSVSDCKMYWQNSGE 424


>11_06_0315 +
           22318155-22318210,22319743-22319769,22319868-22319990,
           22320867-22321110,22321487-22321981
          Length = 314

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +2

Query: 416 LTIWARIGRVRSLERTLSSVVDLPQFQDGSIITSLCWVIVP 538
           LT W     +   E T +S++    F     +  +CW+++P
Sbjct: 47  LTYWVMYSLITLFELTFASIIQWLPFWPSMKLIFICWLVLP 87


>03_02_0232 + 6614784-6614882,6616145-6616477,6616708-6616967,
            6617328-6617469,6617567-6617938,6618056-6618187,
            6618907-6619035,6619125-6621188
          Length = 1176

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +1

Query: 508  HNEPVLGYRAGSRERQDLIEELKRTASVIEDVPIVIAGKNITEGEPRYQVMPHD 669
            H E        S ER + IEE   T +V   +    AGK   E +P+    PH+
Sbjct: 901  HQESSSSDSEESPERVNSIEEAPSTKTVSRSLLEACAGKGFREYQPKAMHRPHN 954


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,336,724
Number of Sequences: 37544
Number of extensions: 327902
Number of successful extensions: 769
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)