Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0279
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6771| Best HMM Match : Aldedh (HMM E-Value=0)                       35   0.070
SB_46406| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-18)                 31   1.1  
SB_35229| Best HMM Match : Asparaginase_2 (HMM E-Value=3.2e-05)        29   3.5  
SB_9147| Best HMM Match : Sushi (HMM E-Value=0)                        29   4.6  
SB_21261| Best HMM Match : APSES (HMM E-Value=2.3)                     28   6.1  
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_1677| Best HMM Match : WD40 (HMM E-Value=0.00074)                   28   8.0  

>SB_6771| Best HMM Match : Aldedh (HMM E-Value=0)
          Length = 523

 Score = 34.7 bits (76), Expect = 0.070
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 511 NEPVLGYRAGSRERQDLIEELKRTASVIEDVPIVIAGKNITEGEPRYQVMPHDHS 675
           NEP+    A    R  +   +K+  S   ++P++  G+ +  G  +YQV P DHS
Sbjct: 29  NEPLTDVGAN---RSKIDAAIKKVQSETVELPVLCGGEKVYTGNVKYQVSPFDHS 80


>SB_46406| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-18)
          Length = 319

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 19  VKVRRTREICEHFAIISCFINLLEAILDRYAKIKN 123
           V +  T ++C+ F  IS   +L+ A  +RY KI+N
Sbjct: 95  VSICTTMDLCQRFLSISTIFHLVVATGERYVKIRN 129


>SB_35229| Best HMM Match : Asparaginase_2 (HMM E-Value=3.2e-05)
          Length = 477

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 141 LAT*HFVENFNAATPFSRNKKEYEIVKVTALFESNKFFNC 260
           L T  +  NF    P   + K   ++K   +FE N  FNC
Sbjct: 263 LITVDYFSNFWEIDPLPNDAKASTVIKKLKVFEDNALFNC 302


>SB_9147| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1656

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +3

Query: 519  CVGLSCRKPGTPRPN*GAETNR-FSN*RRTNC---NCRKKYYRRRATISG 656
            C  L C  PGTPR +    TN  F+N    +C   +  + Y  RR T++G
Sbjct: 1303 CYLLDCGDPGTPRNSLKLNTNHTFNNYVFYHCLDGHAHRGYSYRRCTVTG 1352


>SB_21261| Best HMM Match : APSES (HMM E-Value=2.3)
          Length = 342

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 83  RFIKHDIIAKCSQISRVLLTXTAQKKF 3
           RFIKHD++ +CS    V L  T +K +
Sbjct: 185 RFIKHDVMEQCSDEKLVKLDLTDKKLY 211


>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 516  ACVGLSCRKPGTPRPN*GAETNRFSN*RRTNCNC 617
            A VG++C  PG P  +     N F N +   C C
Sbjct: 1544 AYVGVNCELPGCPGRDGNCNGNGFCNLKLQKCEC 1577


>SB_1677| Best HMM Match : WD40 (HMM E-Value=0.00074)
          Length = 1087

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 437 GRVRSLERTLSSVVDLPQFQDGSIITSLCW 526
           G +R L+ T S V    +   G+ ITSLCW
Sbjct: 580 GILRCLDMTGSEVTVTEKVDTGATITSLCW 609


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,266,412
Number of Sequences: 59808
Number of extensions: 389780
Number of successful extensions: 850
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)