Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0279
(680 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016672-3|AAT92072.1| 394|Caenorhabditis elegans Aldehyde dehy... 51 7e-07
AF016672-2|AAO38633.1| 512|Caenorhabditis elegans Aldehyde dehy... 51 7e-07
AF016672-1|AAB66116.3| 563|Caenorhabditis elegans Aldehyde dehy... 51 7e-07
Z82282-8|CAB05278.1| 575|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z82282-7|CAB05280.2| 584|Caenorhabditis elegans Hypothetical pr... 28 5.4
U88311-8|AAB42341.2| 918|Caenorhabditis elegans Hypothetical pr... 28 5.4
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 28 5.4
AC024810-18|ABC71796.1| 787|Caenorhabditis elegans Abnormal cel... 28 7.1
AB212859-1|BAE66674.1| 787|Caenorhabditis elegans COGC-1 protein. 28 7.1
Z81491-15|CAB04022.2| 216|Caenorhabditis elegans Hypothetical p... 27 9.4
>AF016672-3|AAT92072.1| 394|Caenorhabditis elegans Aldehyde
dehydrogenase protein6, isoform c protein.
Length = 394
Score = 51.2 bits (117), Expect = 7e-07
Identities = 26/54 (48%), Positives = 33/54 (61%)
Frame = +1
Query: 511 NEPVLGYRAGSRERQDLIEELKRTASVIEDVPIVIAGKNITEGEPRYQVMPHDH 672
NEP+L YR GS+ERQDL L + I +VP+ I K IT + QV+P DH
Sbjct: 34 NEPILEYRKGSKERQDLEAALAFYSKNITEVPLRIGDKKITNKLEQKQVIPSDH 87
>AF016672-2|AAO38633.1| 512|Caenorhabditis elegans Aldehyde
dehydrogenase protein6, isoform b protein.
Length = 512
Score = 51.2 bits (117), Expect = 7e-07
Identities = 26/54 (48%), Positives = 33/54 (61%)
Frame = +1
Query: 511 NEPVLGYRAGSRERQDLIEELKRTASVIEDVPIVIAGKNITEGEPRYQVMPHDH 672
NEP+L YR GS+ERQDL L + I +VP+ I K IT + QV+P DH
Sbjct: 34 NEPILEYRKGSKERQDLEAALAFYSKNITEVPLRIGDKKITNKLEQKQVIPSDH 87
>AF016672-1|AAB66116.3| 563|Caenorhabditis elegans Aldehyde
dehydrogenase protein6, isoform a protein.
Length = 563
Score = 51.2 bits (117), Expect = 7e-07
Identities = 26/54 (48%), Positives = 33/54 (61%)
Frame = +1
Query: 511 NEPVLGYRAGSRERQDLIEELKRTASVIEDVPIVIAGKNITEGEPRYQVMPHDH 672
NEP+L YR GS+ERQDL L + I +VP+ I K IT + QV+P DH
Sbjct: 34 NEPILEYRKGSKERQDLEAALAFYSKNITEVPLRIGDKKITNKLEQKQVIPSDH 87
>Z82282-8|CAB05278.1| 575|Caenorhabditis elegans Hypothetical
protein T07G12.11 protein.
Length = 575
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 553 QDLIEELKRTASVIEDVPIVIAGKNITEGEPRY 651
QDL+EE+ +T + ++ PI+++ G PR+
Sbjct: 135 QDLLEEMVQTVADVDQAPILLSTTLANIGVPRF 167
>Z82282-7|CAB05280.2| 584|Caenorhabditis elegans Hypothetical
protein T07G12.10 protein.
Length = 584
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +1
Query: 553 QDLIEELKRTASVIEDVPIVIAGKNITEGEPRY 651
QDL+EE+ +T + ++ PI+++ G PR+
Sbjct: 136 QDLLEEMVQTVADVDQAPILLSTTLANIGVPRF 168
>U88311-8|AAB42341.2| 918|Caenorhabditis elegans Hypothetical
protein C10H11.1 protein.
Length = 918
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +1
Query: 547 ERQDLIEELKRTASVIEDVPIVIAGKNITEGEPRYQVMP 663
ERQ +++ + +A+V++D+PI + + + + R Q P
Sbjct: 51 ERQPAVQQRRTSANVLQDLPIFQRAQQLHQQQQRPQSFP 89
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +3
Query: 156 FVENFNAATPFS-RNKKEYEIVKVTALFESN-KFFNCRGRTR 275
F+ENF TPFS R + E K TA ++ N KF GR R
Sbjct: 1038 FMENFEGDTPFSQRAECPIEEKKQTAKYDENDKFMFPLGRLR 1079
>AC024810-18|ABC71796.1| 787|Caenorhabditis elegans Abnormal cell
migration protein 30 protein.
Length = 787
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 13 CAVKVRRTREICEHFAIISCFINLLEAI 96
CAV + E+CE+F + I+LL+AI
Sbjct: 304 CAVTHKLVAEVCEYFDNLDQIIDLLQAI 331
>AB212859-1|BAE66674.1| 787|Caenorhabditis elegans COGC-1 protein.
Length = 787
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 13 CAVKVRRTREICEHFAIISCFINLLEAI 96
CAV + E+CE+F + I+LL+AI
Sbjct: 304 CAVTHKLVAEVCEYFDNLDQIIDLLQAI 331
>Z81491-15|CAB04022.2| 216|Caenorhabditis elegans Hypothetical
protein D1086.7 protein.
Length = 216
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 87 K*VYKTRYYCKMFANFPSP 31
K +Y T CK FA FPSP
Sbjct: 82 KFIYSTNAVCKTFAPFPSP 100
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,015,430
Number of Sequences: 27780
Number of extensions: 295087
Number of successful extensions: 699
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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