Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0279
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g43800.1 68414.m05046 acyl-[acyl-carrier-protein] desaturase,...    28   6.6  
At3g25882.1 68416.m03225 NPR1/NIM1-interacting protein 2 (NIMIN-...    27   8.7  

>At1g43800.1 68414.m05046 acyl-[acyl-carrier-protein] desaturase,
           putative / stearoyl-ACP desaturase, putative similar to
           Acyl-[acyl-carrier protein] desaturase from Lupinus
           luteus GI:4704824, Asclepias syriaca GI:1762436, Ricinus
           communis SP|P22337; contains Pfam profile PF03405 Fatty
           acid desaturase
          Length = 391

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 547 ERQDLIEELK-RTASVIEDVPIVIAGKNITEGE-PRYQVM 660
           E  D + EL+ RTAS+ ++  +V+ G  ITE   P YQ M
Sbjct: 100 EFTDQVRELRERTASLPDEYFVVLVGDMITEDALPTYQTM 139


>At3g25882.1 68416.m03225 NPR1/NIM1-interacting protein 2 (NIMIN-2)
           identical to cDNA NIMIN-2 protein (nimin-2
           gene)GI:12057155
          Length = 122

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 159 VENFNAATPFSRNKKEYEIVKVTALFESNKFFNCRGRTRVVTRPV 293
           VE  N  +  +R K   E+V+     E ++FF    R  V TR V
Sbjct: 11  VEEDNGKSDGNRGKPSTEVVRTVTEEEVDEFFKILRRVHVATRTV 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,988,498
Number of Sequences: 28952
Number of extensions: 266372
Number of successful extensions: 570
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)