Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0278
         (726 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   1.4  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   2.5  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    22   4.4  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   7.7  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 33  ISLVQCRTIYLELNSPTLDE 92
           ++ VQCR+I  E   PT DE
Sbjct: 77  VARVQCRSIKNECPEPTCDE 96


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 196 PSQGYHKQEYWMNQLSSYSKXKM 264
           PS+G H    WMNQ  S+S+ K+
Sbjct: 108 PSKGSH----WMNQDISFSRVKL 126


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 482 CMSALPSSSFVKWRFPWGAQTSK 414
           C S + + S+ +  F W +Q SK
Sbjct: 319 CYSTIGTVSWCELNFDWSSQVSK 341


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 169 FPKRSRKCRPSQGYHKQE 222
           F  R  KCR  Q  H Q+
Sbjct: 117 FKNRRAKCRQQQKQHNQQ 134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,716
Number of Sequences: 336
Number of extensions: 3761
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)