Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0278
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    29   0.68 
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    27   2.7  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    26   4.8  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    26   4.8  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   4.8  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    25   8.3  

>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 82  RLTRSIFCYNMDTYRKIWPELATLTRHNLFPKRS 183
           R  RS+FC  MD+ +K+   L T T + + P +S
Sbjct: 174 RCYRSLFCKKMDSLKKLVSFLLTETENAILPPKS 207


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 345 HLQTPEWFKYNEQGSHRKASREWFGG 422
           HL +    KYN   +HR AS  W+ G
Sbjct: 141 HLSSSSLSKYNHHSNHRLASPGWWYG 166


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
 Frame = -2

Query: 470 LPSSSFVKWRFPWG-----AQTSKPFSRSLSMRSLLIVLEPFRSL*VTSRLFHPSCIMYL 306
           +P SS   W    G     AQ    FS SLS       L   R+      L HP  I YL
Sbjct: 26  IPLSSNSVWTLQTGSIRESAQPCSVFSISLSTHPEWAELAD-RACETMKTLRHPCIIKYL 84

Query: 305 RFLAASLHLYLS 270
               +S HLY++
Sbjct: 85  STYKSSTHLYIA 96


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +3

Query: 117 YLSKDLAGVGYT---YTSQSISEAVKKMQAFAGLPQTGVLDEPT 239
           YL KD+     T   Y + S  +A K   A AGL    V++EPT
Sbjct: 178 YLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLRVVNEPT 221


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 109 NMDTYRKIWPELATL 153
           N+DT R++WPEL  +
Sbjct: 469 NLDTIRRLWPELGRM 483


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 328 WNKREVTYR-LLNGSSTMSKDRIERLLENGLEVW 426
           W   E+  R  ++ SST   + +E+   NGLE W
Sbjct: 491 WIFEEIEARQFIDKSSTQRLEMLEQYCNNGLEYW 524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,105
Number of Sequences: 5004
Number of extensions: 61812
Number of successful extensions: 185
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)