Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0278
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0900 - 21436508-21437521                                         43   2e-04
10_08_0901 - 21443224-21444085,21444804-21444998,21445189-214452...    40   0.002
06_01_0940 + 7235801-7236916                                           39   0.005
02_05_0697 - 30999644-31000762                                         37   0.019
04_04_1242 - 32016553-32016857,32017628-32017784,32017871-320180...    29   5.0  
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731...    29   5.0  
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108...    28   6.6  

>10_08_0900 - 21436508-21437521
          Length = 337

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 17/33 (51%), Positives = 20/33 (60%)
 Frame = +3

Query: 510 DGFPFDGPGRVVAHAFPPPLGDIHFDDDETWGV 608
           DG PFDGP  ++ HAF P  G +H D  E W V
Sbjct: 200 DGVPFDGPLGILGHAFSPKNGRLHLDASEHWAV 232


>10_08_0901 -
           21443224-21444085,21444804-21444998,21445189-21445259,
           21446293-21447094,21447687-21447723,21448270-21449023
          Length = 906

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 19/33 (57%), Positives = 19/33 (57%)
 Frame = +3

Query: 510 DGFPFDGPGRVVAHAFPPPLGDIHFDDDETWGV 608
           DG PFDGP  V AHA  P  G I FD  E W V
Sbjct: 131 DGHPFDGPLNVYAHATGPEDGRIDFDAAERWAV 163



 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +2

Query: 647 DFFAVAVHEIGHSLGMSLLTFKSS 718
           D  +VAVHEIGH+LG+   + +SS
Sbjct: 799 DLESVAVHEIGHALGLGHSSSESS 822



 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 647 DFFAVAVHEIGHSLGMSLLTFKSS 718
           D   VA HEIGH+LG+   T +SS
Sbjct: 175 DLETVATHEIGHALGLDHSTSESS 198


>06_01_0940 + 7235801-7236916
          Length = 371

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +3

Query: 510 DGFPFDGPGRVVAHAFPPPLGDIHFDDDETW 602
           DG  FDGP   +AHAF P  G +H D  E W
Sbjct: 225 DGEAFDGPLGTLAHAFSPTNGRLHLDASEAW 255


>02_05_0697 - 30999644-31000762
          Length = 372

 Score = 36.7 bits (81), Expect = 0.019
 Identities = 16/31 (51%), Positives = 17/31 (54%)
 Frame = +3

Query: 510 DGFPFDGPGRVVAHAFPPPLGDIHFDDDETW 602
           DG  FDGP   +AHAF P  G  H D  E W
Sbjct: 225 DGEAFDGPLGTLAHAFSPTDGRFHLDAAEAW 255


>04_04_1242 - 32016553-32016857,32017628-32017784,32017871-32018089,
            32018184-32018470,32018629-32019934,32020021-32020178,
            32020250-32020335,32023106-32023173,32023297-32023340,
            32023418-32023490,32023605-32023684,32023774-32023867,
            32023981-32024151,32024463-32024557,32025049-32025128,
            32025137-32025333,32025896-32026183
          Length = 1235

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 387  SHRKASRE-WFGGLGAPREPPLHET 458
            S RK SR+  FG +G PR P LH T
Sbjct: 1144 SPRKLSRQNSFGSIGTPRTPNLHST 1168


>01_06_1123 +
           34671365-34671883,34672366-34672625,34673045-34673143,
           34673237-34675178,34675588-34675658,34676158-34676307,
           34676963-34677038,34677131-34677232,34677707-34677855,
           34678214-34678364
          Length = 1172

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +3

Query: 81  TLDEVNFLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDEPT 239
           T+D V +LL Y Y S          T  ++   + +  +F+G PQT    E T
Sbjct: 182 TIDIVRYLLSYAYGSPVSYLKDKELTDSAVRNILAEFVSFSGFPQTSSYAEST 234


>05_01_0160 +
           1081416-1081647,1081840-1082012,1082169-1082246,
           1082372-1082529,1082558-1082709,1083232-1083290,
           1083633-1083912,1084235-1084470,1084601-1084744,
           1084845-1085012
          Length = 559

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 445 GGSRGAPKPPNHSLEAFLCDPCSLYLNHSGVCK 347
           GGS+GA  PP   +  + CD CS+  +  G+ +
Sbjct: 96  GGSKGAA-PPARDIRRYKCDFCSVVRSKKGLIR 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,561,663
Number of Sequences: 37544
Number of extensions: 428879
Number of successful extensions: 1174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)