Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0278
(726 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022971-4|AAG23982.2| 579|Caenorhabditis elegans Hypothetical ... 61 7e-10
AB007815-1|BAA28351.1| 579|Caenorhabditis elegans matrix metall... 61 7e-10
Z95309-1|CAB08559.2| 446|Caenorhabditis elegans Hypothetical pr... 49 3e-06
U00038-1|AAA50663.2| 279|Caenorhabditis elegans Hypothetical pr... 48 7e-06
AF099191-1|AAF78096.1| 279|Caenorhabditis elegans MMP-like prot... 48 7e-06
U41266-1|AAM48565.1| 521|Caenorhabditis elegans Zinc metallopro... 46 4e-05
AB007817-1|BAA28353.1| 521|Caenorhabditis elegans matrix metall... 46 4e-05
Z78414-1|CAB01669.2| 472|Caenorhabditis elegans Hypothetical pr... 36 0.029
AF040648-3|AAL06034.2| 453|Caenorhabditis elegans Hypothetical ... 30 1.5
AF040648-1|AAK21412.1| 519|Caenorhabditis elegans Hypothetical ... 30 1.5
AB007816-1|BAA28352.1| 394|Caenorhabditis elegans matrix metall... 30 1.5
>AF022971-4|AAG23982.2| 579|Caenorhabditis elegans Hypothetical
protein C31B8.8 protein.
Length = 579
Score = 61.3 bits (142), Expect = 7e-10
Identities = 46/149 (30%), Positives = 64/149 (42%), Gaps = 2/149 (1%)
Frame = +3
Query: 162 QSISEAVKKMQAFAGLPQTGVLDEPTK-QLFKXKDAV*KI*MKTRSKKSQIHYTRRME*T 338
Q A++K Q FAG+ +TG LD TK ++ + V + S SQ +++ T
Sbjct: 88 QVFKSAIRKFQEFAGIAKTGFLDAATKAKMALSRCGVTDAPLALTSGSSQFKWSK----T 143
Query: 339 RGHLQTPEWFKYNEQGSHRKASREWFGGLGAPREPPLHETR*RQSGHTSL-FRFRQP*DG 515
R W + R+A E +G E + + F R D
Sbjct: 144 RLTYSIESWSSDLSKDDVRRAISEAYGLWSKVTPLEFSEVPAGSTSDIKIRFGVRNHNDP 203
Query: 516 FPFDGPGRVVAHAFPPPLGDIHFDDDETW 602
+PFDG G V+AHA P G HFDDDE W
Sbjct: 204 WPFDGEGGVLAHATMPESGMFHFDDDENW 232
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 644 TDFFAVAVHEIGHSLGM 694
TD AVA+HE GH+LG+
Sbjct: 246 TDLLAVAIHEGGHTLGL 262
>AB007815-1|BAA28351.1| 579|Caenorhabditis elegans matrix
metalloproteinase protein.
Length = 579
Score = 61.3 bits (142), Expect = 7e-10
Identities = 46/149 (30%), Positives = 64/149 (42%), Gaps = 2/149 (1%)
Frame = +3
Query: 162 QSISEAVKKMQAFAGLPQTGVLDEPTK-QLFKXKDAV*KI*MKTRSKKSQIHYTRRME*T 338
Q A++K Q FAG+ +TG LD TK ++ + V + S SQ +++ T
Sbjct: 88 QVFKSAIRKFQEFAGIAKTGFLDAATKAKMALSRCGVTDAPLALTSGSSQFKWSK----T 143
Query: 339 RGHLQTPEWFKYNEQGSHRKASREWFGGLGAPREPPLHETR*RQSGHTSL-FRFRQP*DG 515
R W + R+A E +G E + + F R D
Sbjct: 144 RLTYSIESWSSDLSKDDVRRAISEAYGLWSKVTPLEFSEVPAGSTSDIKIRFGVRNHNDP 203
Query: 516 FPFDGPGRVVAHAFPPPLGDIHFDDDETW 602
+PFDG G V+AHA P G HFDDDE W
Sbjct: 204 WPFDGEGGVLAHATMPESGMFHFDDDENW 232
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 644 TDFFAVAVHEIGHSLGM 694
TD AVA+HE GH+LG+
Sbjct: 246 TDLLAVAIHEGGHTLGL 262
>Z95309-1|CAB08559.2| 446|Caenorhabditis elegans Hypothetical
protein H36L18.1 protein.
Length = 446
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/32 (62%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Frame = +3
Query: 510 DGFPFDGPGRVVAHAFPPPL-GDIHFDDDETW 602
DG PFDG G ++AHAF P GD+HFD+DE W
Sbjct: 38 DGEPFDGKGNILAHAFFPRYGGDVHFDEDELW 69
Score = 33.1 bits (72), Expect = 0.21
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +2
Query: 647 DFFAVAVHEIGHSLGM 694
D +AVAVHEIGHSLG+
Sbjct: 110 DLYAVAVHEIGHSLGL 125
Score = 31.5 bits (68), Expect = 0.63
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 460 DEGKADIQVYFASGNHETGSP 522
DE KA+I + FA+G+HE G P
Sbjct: 21 DEQKANIDIVFAAGDHEDGEP 41
>U00038-1|AAA50663.2| 279|Caenorhabditis elegans Hypothetical
protein T21D11.1 protein.
Length = 279
Score = 48.0 bits (109), Expect = 7e-06
Identities = 20/33 (60%), Positives = 23/33 (69%)
Frame = +3
Query: 510 DGFPFDGPGRVVAHAFPPPLGDIHFDDDETWGV 608
DGFPFDG VVAHAF P G +HFD +E W +
Sbjct: 116 DGFPFDGQDGVVAHAFYPRDGRLHFDAEEQWSL 148
>AF099191-1|AAF78096.1| 279|Caenorhabditis elegans MMP-like protein
protein.
Length = 279
Score = 48.0 bits (109), Expect = 7e-06
Identities = 20/33 (60%), Positives = 23/33 (69%)
Frame = +3
Query: 510 DGFPFDGPGRVVAHAFPPPLGDIHFDDDETWGV 608
DGFPFDG VVAHAF P G +HFD +E W +
Sbjct: 116 DGFPFDGQDGVVAHAFYPRDGRLHFDAEEQWSL 148
>U41266-1|AAM48565.1| 521|Caenorhabditis elegans Zinc
metalloprotease protein 1 protein.
Length = 521
Score = 45.6 bits (103), Expect = 4e-05
Identities = 24/57 (42%), Positives = 35/57 (61%)
Frame = +3
Query: 84 LDEVNFLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDEPTKQLFK 254
+D FL +YGYL+ +S+S+S+A+K MQ AGL +TG LDE T Q+ +
Sbjct: 24 VDHTKFLQKYGYLTSG----DNQLSSESLSDALKNMQRMAGLEETGELDERTIQMME 76
>AB007817-1|BAA28353.1| 521|Caenorhabditis elegans matrix
metalloproteinase protein.
Length = 521
Score = 45.6 bits (103), Expect = 4e-05
Identities = 24/57 (42%), Positives = 35/57 (61%)
Frame = +3
Query: 84 LDEVNFLLQYGYLSKDLAGVGYTYTSQSISEAVKKMQAFAGLPQTGVLDEPTKQLFK 254
+D FL +YGYL+ +S+S+S+A+K MQ AGL +TG LDE T Q+ +
Sbjct: 24 VDHTKFLQKYGYLTSG----DNQLSSESLSDALKNMQRMAGLEETGELDERTIQMME 76
>Z78414-1|CAB01669.2| 472|Caenorhabditis elegans Hypothetical
protein W09D12.1 protein.
Length = 472
Score = 35.9 bits (79), Expect = 0.029
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +1
Query: 319 QEGWNKREVTYRLLNGSSTMSKDRIERLLENGLEVWAPHGNLHFTKLDEGKADIQVYF 492
+E W K+ +TY+++N +T+S+ +I E W F + DI + F
Sbjct: 115 KELWTKKSLTYKVVNTPNTLSQAQIRSAAHEAFEQWTRASGFKFVETTGATPDITITF 172
>AF040648-3|AAL06034.2| 453|Caenorhabditis elegans Hypothetical
protein H19M22.3c protein.
Length = 453
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 5/28 (17%)
Frame = +3
Query: 540 VVAHAFPP----PL-GDIHFDDDETWGV 608
V+AH F P PL GDIHFDD E W +
Sbjct: 197 VLAHTFFPGYARPLNGDIHFDDAEDWEI 224
>AF040648-1|AAK21412.1| 519|Caenorhabditis elegans Hypothetical
protein H19M22.3a protein.
Length = 519
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 5/28 (17%)
Frame = +3
Query: 540 VVAHAFPP----PL-GDIHFDDDETWGV 608
V+AH F P PL GDIHFDD E W +
Sbjct: 229 VLAHTFFPGYARPLNGDIHFDDAEDWEI 256
>AB007816-1|BAA28352.1| 394|Caenorhabditis elegans matrix
metalloproteinase protein.
Length = 394
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 5/28 (17%)
Frame = +3
Query: 540 VVAHAFPP----PL-GDIHFDDDETWGV 608
V+AH F P PL GDIHFDD E W +
Sbjct: 138 VLAHTFFPGYARPLNGDIHFDDAEDWEI 165
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,410,004
Number of Sequences: 27780
Number of extensions: 357284
Number of successful extensions: 916
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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