Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0278
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.1  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   9.0  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   9.0  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   9.0  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 196 ACIFLTASEIDC 161
           AC+ L AS IDC
Sbjct: 10  ACLLLAASPIDC 21


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 591 HHQNVYRRVAVETREPLLDQG 529
           HH N     ++ TR+ LL+ G
Sbjct: 121 HHDNARPHTSLVTRQKLLELG 141


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 245 LLSWFIQYSCLW 210
           LL W + Y C+W
Sbjct: 181 LLVWILCYFCIW 192


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 591 HHQNVYRRVAVETREPLLDQG 529
           HH N     ++ TR+ LL+ G
Sbjct: 243 HHDNARPHTSLVTRQKLLELG 263


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,463
Number of Sequences: 438
Number of extensions: 4357
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)