Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0278
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24140.1 68414.m03045 matrixin family protein similar to matr...    50   2e-06
At1g70170.1 68414.m08074 matrixin family protein similar to SP|P...    44   8e-05
At1g59970.1 68414.m06755 matrixin family protein similar to SP|P...    42   4e-04
At2g45040.1 68415.m05607 matrix metalloproteinase nearly identic...    42   6e-04
At4g16640.1 68417.m02515 matrix metalloproteinase, putative meta...    41   0.001
At1g74290.1 68414.m08603 esterase/lipase/thioesterase family pro...    29   2.4  
At4g14510.1 68417.m02236 expressed protein contains Pfam domain,...    29   3.1  
At3g42070.1 68416.m04317 hypothetical protein                          28   7.2  
At2g40130.1 68415.m04935 heat shock protein-related contains sim...    28   7.2  
At4g39350.1 68417.m05570 cellulose synthase, catalytic subunit (...    27   9.6  
At3g51770.1 68416.m05677 tetratricopeptide repeat (TPR)-containi...    27   9.6  
At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit, ...    27   9.6  

>At1g24140.1 68414.m03045 matrixin family protein similar to matrix
           metalloproteinase [Cucumis sativus] GI:7159629; contains
           InterPro accession IPR001818: Matrixin
          Length = 384

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 19/31 (61%), Positives = 21/31 (67%)
 Frame = +3

Query: 510 DGFPFDGPGRVVAHAFPPPLGDIHFDDDETW 602
           DG PFDGP R +AHAF PP G  H D +E W
Sbjct: 230 DGEPFDGPMRTLAHAFSPPTGHFHLDGEENW 260



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 331 NKREVTYRLLNGSSTMSKDRIERLLENGLEVWAPHGNLHFTKLDE-GKADIQVYFASGNH 507
           N+R++TY   +  + ++++ ++ +       W     L FT+++    +DI + F SG H
Sbjct: 171 NRRDLTYAF-DPRNALTEE-VKSVFSRAFTRWEEVTPLTFTRVERFSTSDISIGFYSGEH 228

Query: 508 ETGSP 522
             G P
Sbjct: 229 GDGEP 233


>At1g70170.1 68414.m08074 matrixin family protein similar to
           SP|P29136 Metalloendoproteinase 1 precursor (EC
           3.4.24.-) (SMEP1) {Glycine max}; contains InterPro
           accession IPR001818: Matrixin
          Length = 378

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 19/33 (57%), Positives = 20/33 (60%)
 Frame = +3

Query: 510 DGFPFDGPGRVVAHAFPPPLGDIHFDDDETWGV 608
           DG PFDG    +AHAF PP G  H D DE W V
Sbjct: 226 DGEPFDGVLGTLAHAFSPPSGKFHLDADENWVV 258


>At1g59970.1 68414.m06755 matrixin family protein similar to
           SP|P29136 Metalloendoproteinase 1 precursor (EC
           3.4.24.-) (SMEP1) {Glycine max}; contains InterPro
           accession IPR001818: Matrixin
          Length = 360

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +3

Query: 510 DGFPFDGPGRVVAHAFPPPLGDIHFDDDETW 602
           DG PFDG    +AHA  PP G +H D DE W
Sbjct: 214 DGEPFDGAMGTLAHASSPPTGMLHLDGDEDW 244



 Score = 33.9 bits (74), Expect = 0.11
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +1

Query: 334 KREVTYRLLNGSSTMSKDRIERLLENGLEVWAPHGNLHFTKLDEG-KADIQVYFASGNHE 510
           KR++TY     ++    D ++R+       WA    L+FT+ +   +ADI + F SG H 
Sbjct: 156 KRDLTYAFAPQNNLT--DEVKRVFSRAFTRWAEVTPLNFTRSESILRADIVIGFFSGEHG 213

Query: 511 TGSP 522
            G P
Sbjct: 214 DGEP 217



 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 641 LTDFFAVAVHEIGHSLGM 694
           + D  +VAVHEIGH LG+
Sbjct: 261 VVDLESVAVHEIGHLLGL 278


>At2g45040.1 68415.m05607 matrix metalloproteinase nearly identical
           to metalloproteinase [Arabidopsis thaliana] GI:3128477;
           contains InterPro accession IPR001818: Matrixin
          Length = 342

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 18/33 (54%), Positives = 20/33 (60%)
 Frame = +3

Query: 510 DGFPFDGPGRVVAHAFPPPLGDIHFDDDETWGV 608
           DG PFDG   V+AH F P  G +H D  ETW V
Sbjct: 201 DGEPFDGVLGVLAHTFSPENGRLHLDKAETWAV 233



 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 647 DFFAVAVHEIGHSLGMSLLTFKSS 718
           D  +VAVHEIGH LG+   + K +
Sbjct: 245 DLESVAVHEIGHVLGLGHSSVKDA 268


>At4g16640.1 68417.m02515 matrix metalloproteinase, putative
           metalloproteinase [Arabidopsis thaliana] GI:3128477;
           contains InterPro accession IPR001818: Matrixin
          Length = 364

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +3

Query: 510 DGFPFDGPGRVVAHAFPPPLGDIHFDDDETW 602
           DG PFDG    +AHAF P  G +H D  ETW
Sbjct: 223 DGLPFDGVLGTLAHAFAPENGRLHLDAAETW 253



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/68 (20%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +1

Query: 328 WNKREVTYRLLNGSST--MSKDRIERLLENGLEVWAPHGNLHFTKLDE-GKADIQVYFAS 498
           WN+  +TY +        ++ + ++ +       W+    + F ++D+   AD+++ F +
Sbjct: 159 WNRDTLTYAISKTHKLDYLTSEDVKTVFRRAFSQWSSVIPVSFEEVDDFTTADLKIGFYA 218

Query: 499 GNHETGSP 522
           G+H  G P
Sbjct: 219 GDHGDGLP 226


>At1g74290.1 68414.m08603 esterase/lipase/thioesterase family
           protein contains Interpro entry IPR000379
           esterase/lipase/thioesterase family
          Length = 371

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 339 RGHLQTPEWFKYNEQGSHRKASREWFGGLGAPREPPL 449
           RG+ + P W +  +QG H   +R+   G G     PL
Sbjct: 260 RGYTRKPHWAEVRQQGIHESINRDMIVGFGNWEFDPL 296


>At4g14510.1 68417.m02236 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 932

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +1

Query: 316 IQEGWNKREVTYRLLNGSSTMSKDRIERLLE---NGLEVW 426
           IQE W   E+    + GSS ++  R+  +LE    GL +W
Sbjct: 256 IQEKWKGSEIVRLKIEGSSALNMRRMHEILERKTGGLVIW 295


>At3g42070.1 68416.m04317 hypothetical protein
          Length = 230

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 106 YNMDTYRKIWPELATLTRHN-LFPKRSRKCRPSQG 207
           Y +D+++ +W  +ATL+R   + P R R+  P+ G
Sbjct: 195 YVVDSFKSVWNAIATLSRCGCVAPTRRRRHSPALG 229


>At2g40130.1 68415.m04935 heat shock protein-related contains
           similarity to 101 kDa heat shock protein; HSP101
           [Triticum aestivum] gi|11561808|gb|AAC83689
          Length = 491

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 85  LTRSIFCYNMDTYRKIWPELATLTRHNLFPKRSRKCRPSQGYHK 216
           +T  +   +  T   + P L   TR +L  K S KCRP +G+++
Sbjct: 425 ITGPVSSISDQTQSTLPPWLQMTTRTDLNQKSSAKCRPKKGWNQ 468


>At4g39350.1 68417.m05570 cellulose synthase, catalytic subunit
           (Ath-A) identical to gi:2827141
          Length = 1084

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
 Frame = -2

Query: 416 KPFSRSLSMRSLLIVLEPFRSL*VTSRLFHPSCIMYLRFLAA---SLHLYLSNRIFXFE* 246
           +P SR L +RS  I   P+R L +  RL       + R L     +  L+L++ I     
Sbjct: 260 QPLSRKLPIRSSRI--NPYRML-ILCRLAILGLFFHYRILHPVNDAYGLWLTSVICEIWF 316

Query: 245 LLSWFIQYSCLW*PCEGLHFLDRFGNR 165
            +SW +     W P E   +LDR   R
Sbjct: 317 AVSWILDQFPKWYPIERETYLDRLSLR 343


>At3g51770.1 68416.m05677 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 958

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 627 LQIYQTQLPRSRHHQNVYR-RVAVETREPLLDQGH 526
           LQ++  +LP S H+ NV +   + E RE L   GH
Sbjct: 375 LQVFLRELPSSMHNPNVIKIFCSAEGRERLASLGH 409


>At2g21770.1 68415.m02588 cellulose synthase, catalytic subunit,
           putative similar to gi:2827141 cellulose synthase
           catalytic subunit, Arabidopsis thaliana (Ath-A)
          Length = 1088

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
 Frame = -2

Query: 416 KPFSRSLSMRSLLIVLEPFRSL*VTSRLFHPSCIMYLRFLAA---SLHLYLSNRIFXFE* 246
           +P SR L +RS  I   P+R L +  RL       + R L     +  L+L++ I     
Sbjct: 265 QPLSRKLPIRSSRI--NPYRML-IFCRLAILGLFFHYRILHPVNDAFGLWLTSVICEIWF 321

Query: 245 LLSWFIQYSCLW*PCEGLHFLDRFGNR 165
            +SW +     W P E   +LDR   R
Sbjct: 322 AVSWILDQFPKWYPIERETYLDRLSLR 348


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,575,986
Number of Sequences: 28952
Number of extensions: 335815
Number of successful extensions: 973
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)